Scaffold Ga0236341_1000302

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000302
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31515
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016247	Metagenome	248	Y
F055446	Metagenome	138	Y
F058718	Metagenome	134	Y
F064337	Metagenome	128	N
F083727	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100030211	F055446	GAG	MAIKNKKYNYYKLNVGFFPDIVKLCFDNTVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICLHEKEKHARKASGKLLKQKSKRVKGPELQVDQLSLGGTGQGSVPLGQNSLSRTKDFDWQDITKADDSFFPTK
Ga0236341_100030214	F016247	AGGA	MTHFIVEHNYRGSYVMETICGVEDIDTSMYKDLLGVWVCDSQEELQIMEKQLKELRHARSSQPS
Ga0236341_10003022	F064337	AGGA	MSLTEMREDLCTQKRVSRSKVTYDINYDQEVIYVQEGWSDGQNTVWDNEIGIVLADALTKHGKVQEK
Ga0236341_100030223	F058718	AGGA	MQVICYDTEFDVPDLLIDQFMKDFDGLPGGKHREGVMQIRGSIEEILDIVADDPELLYEPEYQTDFIRALAMKQALGELGILYDS
Ga0236341_100030234	F083727	AGGA	MHGQQTMKYLNDKAVSDAMLAKHQKDQIDPVFAKAAEEAIAARVKNITE