Scaffold Ga0212123_10055355

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10055355
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3579
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F087282	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100553552	F032938	AGGAG	MQKYLVVSYDDDQQQWFWDCVAAKTAADAVAHVCERRPYVIAADAASPSQVQRIAKDLKSRPIARIIHQFDCDTATPEEEQGGNEQ
Ga0212123_100553553	F014894	AGGA	MRMSIGIPGFSIYFDHHHVKPFIKDHSRKAKELFDELVVPVVLRGTCKALEVVANNTADAHDYLIGKLKTKQSA
Ga0212123_100553554	F045709	GGAGG	VTLTPSQKGSFLAGIGLWMLIWASVWKADDIAEAMCIQRWFNSNRCLRWIGQHKSTSLLATELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLVPFLEKLLSQKGTVTTALQ
Ga0212123_100553556	F036810	AGGAG	MSLQLQQGTGVSARVRWLAFAASKRKAIQLSIERRAFERKLETIVRAANAHHSCGRSPGTVHFKLLRTCADELCADFAQRWNIPPELLEAQIPAITKLKSLADPPAKPNPAPLVGLGIVVAAATFLLLGVLGGLASVDYHLVGGR
Ga0212123_100553557	F087282	AGGAG	MSKRVFVCVSGGVVDKVIVPPQTDGTWTVIDWDNIEADPAREWGHFDEEDKKYICENYPDGCAKYFLQFMRDMGGR