Metagenome / Metatranscriptome Family F087282

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087282
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	73 residues
Representative Sequence	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDRVYVRANYPDDYAKYFAAVEGK
Number of Associated Samples	75
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	91.82 %
% of genes near scaffold ends (potentially truncated)	8.18 %
% of genes from short scaffolds (< 2000 bps)	70.91 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (48.182 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.00% β-sheet: 17.00% Coil/Unstructured: 49.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.110.9.1: GlcG-like	d2a2la1	2a2l	0.56809
c.77.1.0: automated matches	d3ty4a_	3ty4	0.53805
c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases	d4iwha1	4iwh	0.5305
e.23.1.0: automated matches	d6m01a_	6m01	0.52897
e.23.1.0: automated matches	d6o6eb1	6o6e	0.52835

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03547	Mem_trans	3.64
PF05368	NmrA	1.82
PF03551	PadR	1.82
PF04966	OprB	1.82
PF07992	Pyr_redox_2	1.82
PF01566	Nramp	1.82
PF02687	FtsX	1.82
PF12697	Abhydrolase_6	1.82
PF07690	MFS_1	1.82
PF03098	An_peroxidase	0.91
PF10518	TAT_signal	0.91
PF13414	TPR_11	0.91
PF01381	HTH_3	0.91
PF02776	TPP_enzyme_N	0.91
PF02321	OEP	0.91
PF05336	rhaM	0.91
PF09286	Pro-kuma_activ	0.91
PF00590	TP_methylase	0.91
PF13188	PAS_8	0.91
PF12867	DinB_2	0.91
PF14903	WG_beta_rep	0.91
PF13620	CarboxypepD_reg	0.91
PF16576	HlyD_D23	0.91
PF12651	RHH_3	0.91
PF00174	Oxidored_molyb	0.91
PF03648	Glyco_hydro_67N	0.91
PF00175	NAD_binding_1	0.91
PF01152	Bac_globin	0.91
PF00190	Cupin_1	0.91
PF13191	AAA_16	0.91
PF00072	Response_reg	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0679	Predicted permease, AEC (auxin efflux carrier) family	General function prediction only [R]	3.64
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.82
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.82
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.82
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.82
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	1.82
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	1.82
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.91
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.91
COG3254	L-rhamnose mutarotase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3661	Alpha-glucuronidase	Carbohydrate transport and metabolism [G]	0.91
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.91
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
All Organisms	root	All Organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
cellular organisms	root	All Organisms → cellular organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.45 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.45 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.91 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.91 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101628057	All Organisms → cellular organisms → Bacteria → Proteobacteria	2295	Open in IMG/M
3300002907\|JGI25613J43889_10014607	Not Available	2188	Open in IMG/M
3300002907\|JGI25613J43889_10016754	Not Available	2049	Open in IMG/M
3300002907\|JGI25613J43889_10017274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2019	Open in IMG/M
3300002907\|JGI25613J43889_10154073	Not Available	598	Open in IMG/M
3300002914\|JGI25617J43924_10013740	All Organisms → cellular organisms → Bacteria → Acidobacteria	2702	Open in IMG/M
3300002914\|JGI25617J43924_10056927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1426	Open in IMG/M
3300002917\|JGI25616J43925_10092866	Not Available	1252	Open in IMG/M
3300002917\|JGI25616J43925_10316152	Not Available	580	Open in IMG/M
3300004082\|Ga0062384_100547423	Not Available	775	Open in IMG/M
3300004152\|Ga0062386_100317248	Not Available	1245	Open in IMG/M
3300006052\|Ga0075029_101359116	Not Available	500	Open in IMG/M
3300006059\|Ga0075017_100292104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300006102\|Ga0075015_100878636	Not Available	542	Open in IMG/M
3300006354\|Ga0075021_10630878	Not Available	685	Open in IMG/M
3300006893\|Ga0073928_10005117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18643	Open in IMG/M
3300006893\|Ga0073928_10046780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	3942	Open in IMG/M
3300007255\|Ga0099791_10029189	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2411	Open in IMG/M
3300007255\|Ga0099791_10289017	Not Available	781	Open in IMG/M
3300007258\|Ga0099793_10236098	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	881	Open in IMG/M
3300007265\|Ga0099794_10750411	Not Available	521	Open in IMG/M
3300007788\|Ga0099795_10018821	All Organisms → cellular organisms → Bacteria	2226	Open in IMG/M
3300009143\|Ga0099792_10439865	Not Available	806	Open in IMG/M
3300010159\|Ga0099796_10084719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1168	Open in IMG/M
3300010376\|Ga0126381_101816405	Not Available	880	Open in IMG/M
3300011269\|Ga0137392_10697410	Not Available	841	Open in IMG/M
3300011271\|Ga0137393_11170983	Not Available	653	Open in IMG/M
3300012096\|Ga0137389_11608642	Not Available	546	Open in IMG/M
3300012189\|Ga0137388_10144322	All Organisms → cellular organisms → Bacteria → Acidobacteria	2100	Open in IMG/M
3300012200\|Ga0137382_11171470	Not Available	547	Open in IMG/M
3300012202\|Ga0137363_10085577	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300012202\|Ga0137363_11715062	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300012203\|Ga0137399_10331182	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300012203\|Ga0137399_10853554	Not Available	767	Open in IMG/M
3300012203\|Ga0137399_11064238	Not Available	681	Open in IMG/M
3300012203\|Ga0137399_11312976	Not Available	608	Open in IMG/M
3300012203\|Ga0137399_11350479	Not Available	598	Open in IMG/M
3300012211\|Ga0137377_10098237	Not Available	2771	Open in IMG/M
3300012362\|Ga0137361_10657146	Not Available	959	Open in IMG/M
3300012362\|Ga0137361_11413458	Not Available	619	Open in IMG/M
3300012363\|Ga0137390_10850606	Not Available	868	Open in IMG/M
3300012582\|Ga0137358_10033169	All Organisms → cellular organisms → Bacteria	3396	Open in IMG/M
3300012582\|Ga0137358_10802922	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300012685\|Ga0137397_10081398	All Organisms → cellular organisms → Bacteria	2355	Open in IMG/M
3300012685\|Ga0137397_10133436	All Organisms → cellular organisms → Bacteria	1834	Open in IMG/M
3300012685\|Ga0137397_10379115	Not Available	1054	Open in IMG/M
3300012918\|Ga0137396_10227222	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300012922\|Ga0137394_10238566	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300012923\|Ga0137359_10314085	Not Available	1394	Open in IMG/M
3300012923\|Ga0137359_10701151	Not Available	882	Open in IMG/M
3300012925\|Ga0137419_10465924	Not Available	998	Open in IMG/M
3300012925\|Ga0137419_10518323	Not Available	948	Open in IMG/M
3300012925\|Ga0137419_11445990	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012927\|Ga0137416_10832879	Not Available	817	Open in IMG/M
3300012927\|Ga0137416_10999361	Not Available	747	Open in IMG/M
3300012927\|Ga0137416_11106569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300012929\|Ga0137404_11121774	Not Available	722	Open in IMG/M
3300012944\|Ga0137410_10029081	All Organisms → cellular organisms → Bacteria	3846	Open in IMG/M
3300015052\|Ga0137411_1163890	Not Available	798	Open in IMG/M
3300015241\|Ga0137418_10492614	Not Available	982	Open in IMG/M
3300015245\|Ga0137409_10037275	All Organisms → cellular organisms → Bacteria	4684	Open in IMG/M
3300016319\|Ga0182033_11158785	Not Available	692	Open in IMG/M
3300016341\|Ga0182035_11485736	Not Available	610	Open in IMG/M
3300020199\|Ga0179592_10012725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3665	Open in IMG/M
3300020199\|Ga0179592_10075641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1543	Open in IMG/M
3300020199\|Ga0179592_10349687	Not Available	651	Open in IMG/M
3300020579\|Ga0210407_10002736	All Organisms → cellular organisms → Bacteria	14899	Open in IMG/M
3300020581\|Ga0210399_11491575	Not Available	525	Open in IMG/M
3300020583\|Ga0210401_11171711	Not Available	627	Open in IMG/M
3300021046\|Ga0215015_10586526	Not Available	562	Open in IMG/M
3300021086\|Ga0179596_10177525	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300021168\|Ga0210406_10000091	All Organisms → cellular organisms → Bacteria → Acidobacteria	137743	Open in IMG/M
3300021168\|Ga0210406_10869739	Not Available	680	Open in IMG/M
3300021170\|Ga0210400_10001680	All Organisms → cellular organisms → Bacteria	21598	Open in IMG/M
3300021170\|Ga0210400_10004377	All Organisms → cellular organisms → Bacteria	12241	Open in IMG/M
3300021170\|Ga0210400_10052135	All Organisms → cellular organisms → Bacteria → Acidobacteria	3186	Open in IMG/M
3300021170\|Ga0210400_10865672	Not Available	739	Open in IMG/M
3300021170\|Ga0210400_11502799	Not Available	534	Open in IMG/M
3300021433\|Ga0210391_10005089	All Organisms → cellular organisms → Bacteria	10841	Open in IMG/M
3300021474\|Ga0210390_11017746	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	676	Open in IMG/M
3300021478\|Ga0210402_10141403	Not Available	2188	Open in IMG/M
3300021479\|Ga0210410_10974814	Not Available	736	Open in IMG/M
3300021479\|Ga0210410_11029945	Not Available	712	Open in IMG/M
3300021479\|Ga0210410_11589225	Not Available	547	Open in IMG/M
3300022557\|Ga0212123_10006834	All Organisms → cellular organisms → Bacteria	18637	Open in IMG/M
3300022557\|Ga0212123_10055355	All Organisms → cellular organisms → Bacteria	3579	Open in IMG/M
3300026304\|Ga0209240_1096777	Not Available	1063	Open in IMG/M
3300026319\|Ga0209647_1076453	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300026320\|Ga0209131_1002539	All Organisms → cellular organisms → Bacteria	12375	Open in IMG/M
3300026320\|Ga0209131_1011205	All Organisms → cellular organisms → Bacteria	5552	Open in IMG/M
3300026359\|Ga0257163_1011646	Not Available	1328	Open in IMG/M
3300026359\|Ga0257163_1014854	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1192	Open in IMG/M
3300026551\|Ga0209648_10013010	All Organisms → cellular organisms → Bacteria	7258	Open in IMG/M
3300026551\|Ga0209648_10180931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1631	Open in IMG/M
3300026555\|Ga0179593_1118644	Not Available	3430	Open in IMG/M
3300026557\|Ga0179587_11054160	Not Available	535	Open in IMG/M
3300027376\|Ga0209004_1007082	All Organisms → cellular organisms → Bacteria → Acidobacteria	1583	Open in IMG/M
3300027655\|Ga0209388_1039547	Not Available	1358	Open in IMG/M
3300027663\|Ga0208990_1036537	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300027701\|Ga0209447_10068706	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300027898\|Ga0209067_10551474	Not Available	658	Open in IMG/M
3300027903\|Ga0209488_10166926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1662	Open in IMG/M
3300028016\|Ga0265354_1029053	Not Available	533	Open in IMG/M
3300028536\|Ga0137415_10161799	All Organisms → cellular organisms → Bacteria	2072	Open in IMG/M
3300028536\|Ga0137415_11154562	Not Available	588	Open in IMG/M
3300030991\|Ga0073994_10035655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1600	Open in IMG/M
3300031090\|Ga0265760_10242139	Not Available	622	Open in IMG/M
3300031240\|Ga0265320_10295763	Not Available	716	Open in IMG/M
3300031823\|Ga0307478_10001322	All Organisms → cellular organisms → Bacteria → Acidobacteria	21662	Open in IMG/M
3300031962\|Ga0307479_10265682	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.27%
Aquatic	Environmental → Aquatic	10.91%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.27%
Sediment	Environmental → Aquatic → Sediment	4.55%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.64%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Loam	Environmental → Terrestrial → Soil → Loam	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	48.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.55%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031240	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG	Host-Associated	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1016280573	3300000364	Soil	MSKRVFVCVSGGVVDEVIVPQETNGTWTVIDWDNIESDPARERGQFDEEDRAYVKTNYPDDYAKYFAAFDSK*
JGI25613J43889_100146072	3300002907	Grasslands Soil	MTRRVFVCVSGGVVNEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIKANYTDDHAKYFLQFCS*
JGI25613J43889_100167542	3300002907	Grasslands Soil	MTRRVFVCVSGGVVNEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIKANYTDDYAKYFAEFEGQ*
JGI25613J43889_100172743	3300002907	Grasslands Soil	MSRRVFACVSGGVVDEAIVPPQADGTWTVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCAKYFSQFMRDMGGR*
JGI25613J43889_101540731	3300002907	Grasslands Soil	MSRRVFVSVSGGVVDEVIVPKETDGTWTVIDWDNIESDPAREWGHFDEEDKVYIKANYPEDYAKYFAEFEGQ*
JGI25617J43924_100137402	3300002914	Grasslands Soil	MSKRVFVCVSGGVVDEVIVPPETNGTWTVIDWDNIESDLAREWDQFDEEDRAYVKANYPEDYAKYFAAFESK*
JGI25617J43924_100569272	3300002914	Grasslands Soil	MSRRVFICVSGGVVDEVIVPPLTDGTWTVIDWDNIESDPAREWGHFDEKDKKYIKQNYPDDCAKYFSQLMRDKGGL*
JGI25616J43925_100928664	3300002917	Grasslands Soil	MSRRVFVCVSGGLVDEVIVPPQTDGTWTVIDWDNTESDPAREWGHFDEEDKKYIRENYPDDCANYFSQFMPDTGGR*
JGI25616J43925_103161522	3300002917	Grasslands Soil	MXRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGRFDEEDKKYIRVNYPVDCTKYFSQFMPDSGGL*
Ga0062384_1005474231	3300004082	Bog Forest Soil	MSRRVFVYVSRGVVDEVIVPPQTDGTWTVIDWDNIESDPEREWRQFNEEDRAYIMRNYGDDYAKFFSQIDRKEDTDNDRHLD*
Ga0062386_1003172481	3300004152	Bog Forest Soil	MSRRVYVSVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPSREWDLFDEEDRAYIKANYADDYAKLFAQFEK*
Ga0075029_1013591162	3300006052	Watersheds	MTKRLFVFVSGGVVDEVIVPPETNGTWTVIDWDNIESDPAREWSQFDEEDRAYVKANCPDDYAKYLAAFDCK*
Ga0075017_1002921042	3300006059	Watersheds	MSHRVYVSVSGGVVDEVIVPPETNGTWTVIDWDNIESDPTREWGQFDEEDRAYVKANYPEDYAKYFATFENK*
Ga0075015_1008786362	3300006102	Watersheds	GVVDEVIVPKETNGTWTVIDWDNIESDPAREWTQFDEEDKAYIKANYADDYAKFFSQTDKLEDLDSK*
Ga0075021_106308781	3300006354	Watersheds	MSKRVFVSVSGGVVDEVNVPPETNGTWTVIDWDNIECDPAREWDQFDEEDRAYIKRNYPDDYAKYFAEFEGN*
Ga0073928_100051173	3300006893	Iron-Sulfur Acid Spring	MSRRVYISVSGGVVDEVIVPAQTDGTWTVIDWDNIESDPAREWAHFDNQDRSHVKGNYPDYYTKYFVAFEHK*
Ga0073928_100467804	3300006893	Iron-Sulfur Acid Spring	MSKRVFVCVSGGVVDKVIVPPQTDGTWTVIDWDNIEADPAREWGHFDEEDKKYICENYPDGCAKYFLQFMRDMGGR*
Ga0099791_100291891	3300007255	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQADGTWTVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCAKYFSQFMRDMGGR*
Ga0099791_102890171	3300007255	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWIVIDWDNIESDPAREWSQFDEEDRKYIKENYPDDCAKYFAQFEGK*
Ga0099793_102360982	3300007258	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEAKYPDDYVKFFAQFEK*
Ga0099794_107504111	3300007265	Vadose Zone Soil	CWRTTVSRRVYVSVSGGVVNGVIVPPQTDGTWTVVDWDNIEADPAREWDQFDEEERAHIRANYPDDYAKFFAQFEK*
Ga0099795_100188212	3300007788	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFFAQFEK*
Ga0099792_104398652	3300009143	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFVAQFEK*
Ga0099796_100847192	3300010159	Vadose Zone Soil	MGRRVFVCVSGGVVEEVMVPPQTDGTWTVIDWDNIESDPVREWDQFDEEDRGYVKANYSDDYAKYFAAFDRK*
Ga0126381_1018164052	3300010376	Tropical Forest Soil	MTQNQTSKEKPVSRRVFVSVSGGVVQEVIVPTQTDGSWTVIDWDNIESDPAGEWSQFDEEDKKYVRENYPDDFAKYFSQLKDN*
Ga0137392_106974102	3300011269	Vadose Zone Soil	MGRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEGDKKYIKENYPDDCAKHFFQFMPDNGGIL*
Ga0137393_111709831	3300011271	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDRVYVRANYPDDYAKNFAAPEGK*
Ga0137389_116086421	3300012096	Vadose Zone Soil	MSRRVFVRVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDRAYVRANYPDDYAKYFAAPEGK*
Ga0137388_101443222	3300012189	Vadose Zone Soil	MSRRVFICVSGGVVDEVIVPPLTDGTWTVIDWDNIESDPAREWGHFDEGDKKYIKENYPDDCAKHFFQFMPDNGGIL*
Ga0137382_111714701	3300012200	Vadose Zone Soil	MSRRVFISVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEEDKKYIRENYPDHCTNYFSEFMRDMGGR*
Ga0137363_100855775	3300012202	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVVDWDNIESDPAREWGHFDEEDKAYIKANYAADYAKYFSQFTPS*
Ga0137363_117150621	3300012202	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRLYVEANYPDDYAKFFAQFEK*
Ga0137399_103311821	3300012203	Vadose Zone Soil	MSRVFVCDSRGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPNDYVKFFAQFEK*
Ga0137399_108535542	3300012203	Vadose Zone Soil	MQKRVYVVVSGGVVNDVDVPTETNGTHTVIDWDNIESDPLREWERFDEEDRAYIKDRYPEDFAKYFSTF*
Ga0137399_110642382	3300012203	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQADGTWTVIDWDNIESDPTREWGRFDEEDKKYIKENYRDDCAKYFSQFMRDMGGR*
Ga0137399_113129761	3300012203	Vadose Zone Soil	MSRREFVCVSGGVVEEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIQVNYPEDYARYFAEFEGK*
Ga0137399_113504791	3300012203	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPLQTDGTWTVVDWDNIESDPAREWGHFDEEDKAYIKANYADDYAKYFSEFTPS*
Ga0137377_100982372	3300012211	Vadose Zone Soil	MSKRVFVCVSGGVVDEVIVPPETNGTWTVIDWDNIESDPEREWGQFDEEDRVYVRANYPDDYAKYFAAVEGK*
Ga0137361_106571461	3300012362	Vadose Zone Soil	MSRCVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEEDKKYVRENYPDDCAKYFSQFMRDMGGR*
Ga0137361_114134582	3300012362	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTNGTWTVIDWDNIESDPAREWGQFDEEDRVYVRANYPDDYAKYFAAVEGK*
Ga0137390_108506062	3300012363	Vadose Zone Soil	MGRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEGDKKYIRENYPSDYAKHFIYIKTDNGGIL*
Ga0137358_100331692	3300012582	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDRVYVRANYPDDYAKYFAAVEGK*
Ga0137358_108029221	3300012582	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRGYVEADYPDDYAKFFAQFEK*
Ga0137397_100813982	3300012685	Vadose Zone Soil	MSRRVYVSVSGGVVNEVIVPPHTDGTWTVIDWDNIESDPAREWDQFDAKDRGYVEANYPDDYAKFFGQFEK*
Ga0137397_101334363	3300012685	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPNDYVKFFAQFEK*
Ga0137397_103791151	3300012685	Vadose Zone Soil	MSRRVFVCVSGGVVDEVNVPPQTDGTWTVIDWDNIEFDPAREWGHFDEEDKKCIRDNYPDDCTKYFSQFMPDSGGL*
Ga0137396_102272222	3300012918	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVRPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFFAQFEK*
Ga0137394_102385661	3300012922	Vadose Zone Soil	MRRVFVCDSDGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPNDYVKFFAQFEK*
Ga0137359_103140853	3300012923	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPETDGTWTVIDWDNIESDPAREWGHFDEEDKAYIKANYADDYAKYFSQFKPS*
Ga0137359_107011513	3300012923	Vadose Zone Soil	VSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEEDKKYIKENYPDDCAKYFLQFMPDDGGMR*
Ga0137419_104659242	3300012925	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPLQTDGTWTVVDWDNIESDPAREWGHFDEEDKAYIKANYADDYAKYFSQFAPS*
Ga0137419_105183231	3300012925	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIQVNYPEDYARYFAEFEGK*
Ga0137419_114459901	3300012925	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEEDRKYIRENYPDDCAKCFSQFMRNTGGR*
Ga0137416_108328791	3300012927	Vadose Zone Soil	VFISVSGGVVDEVIVPAQTDGTWIVIDWDNIESDPAREWDRFDEEDKKYIKENYPDDCIKYFSQFMPGTGGR*
Ga0137416_109993611	3300012927	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPKETDGTWTVIDWDNIESGPAREWGQFDEEDKMYIKANYPEDYEKYFAEFEGK*
Ga0137416_111065691	3300012927	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGRFDEQDKKYIKENYPDDCTKYFSQFSPTLEDFDDKHCHKVS*
Ga0137404_111217741	3300012929	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYAKFFAQFEK*
Ga0137410_100290813	3300012944	Vadose Zone Soil	MSRRVYVSVSGGVVNEVIVPPHTDGTRTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFFAQFEK*
Ga0137411_11638901	3300015052	Vadose Zone Soil	CFWWCGVVDEAIVPPQADGTWTVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCAKYFSQFMRDMGGR*
Ga0137418_104926142	3300015241	Vadose Zone Soil	MTRRVFVCVSGGVVDEVIVPLQTDGTWTVVDWDNIESDPAREWGHFDEEDKAYIKANYADDYAKYFSQFAPS*
Ga0137409_100372753	3300015245	Vadose Zone Soil	MSRRVYVSVSGGVVNEVIVPPHTDGTRTVIDWDNIESDPAREWDQFDAKDRGYVEANYPDDYAKFFAQFEK*
Ga0182033_111587851	3300016319	Soil	VSRRVFISVSGGVVQEVIVPTQTDGTWTVIDWDNIESDPAREWVQFDEEDKKYVRENYPDDYAKYPSISHNFKDN
Ga0182035_114857361	3300016341	Soil	VSRRVFISVSGGVVQEVIVPTQTDGSWTVIDWDNIESDPAREWGQFDEEDRKYVRENYPDDYTKYFSQLKDN
Ga0179592_100127254	3300020199	Vadose Zone Soil	MSRRVFACVSGGVVDEAIVPPQADGTWTVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCAKYFSQFMRDMGGR
Ga0179592_100756413	3300020199	Vadose Zone Soil	MSRREFVCVSGGVVEEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIQVNYPEDYARYFAEFEGK
Ga0179592_103496871	3300020199	Vadose Zone Soil	MGRRVFVCVSGGVVEEVMVPPQTDGTWTVIDWDNIESDPVREWDQFDEEDRGYVKANYSDDYAKYFAAFDRK
Ga0210407_100027365	3300020579	Soil	MSKRIFACVSGGVVAEVIVPPETNGTWTVIDWDNIESDPARDWGQFDEEDRAYVRANYPDDCAKYFAAFENK
Ga0210399_114915752	3300020581	Soil	MSKRVFVCVSGGVVDEVIVPPETNGTWTVIDWDNIESDPAREWGQFDEEDRAYVKANYPDDYAKYFAAFESK
Ga0210401_111717112	3300020583	Soil	MSRRVFVCVSGGVVDEVVIPPETDGTWTVIDWDNIEADPEREWRQFDEEDKDYIRKSCPDDHAKFFSQFNRKEKANNAGNLD
Ga0215015_105865261	3300021046	Soil	VCSFCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDRAREWSQFDEEDRKYIKENYPDDCAKYFAEFEGK
Ga0179596_101775251	3300021086	Vadose Zone Soil	MRRVFVCDSGGLVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFFAQFEK
Ga0210406_1000009198	3300021168	Soil	MSKRVFVCVSGGVVDEVIVPQETNGTWTVIDWDNIESDPAREWGQFDEEDRAYVKTNYPDDYAKYFAAFDSK
Ga0210406_108697392	3300021168	Soil	MSRRVFVCVSGGVADEVIVPPQTDGTWTVIDWDNIEADPAREWGHFDDEDKEYIRENYPDDCAKYFSQFIPDTGGL
Ga0210400_100016808	3300021170	Soil	MSKRVFVYVSGGAVDEVIVPPVTNGTWTVIDWDNIESDPLREWSQFDEEDRAYVRANHPDDYAKHFAALEDK
Ga0210400_1000437712	3300021170	Soil	MSRPVFVSVSGGVVDEVFVPPLTDGTWTVIDWDNIESDPAREWGRFDEEDKKYIKENYPEDCAKHLSQFMRDMGGH
Ga0210400_100521352	3300021170	Soil	MSRRVFVCVSGRVVDEVIVPPQADGTWTVIDWDNIESDPAREWGQFDEEDKVYIKANYPEDYAKYFAEFEGH
Ga0210400_108656721	3300021170	Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGRFDEEDKKYIKVNYPDDHTKYFSQFKPDTGGR
Ga0210400_115027991	3300021170	Soil	VSRRVYVSVSGGVVDEVIVPTQTDGTWTVIDWDNIESDPAREWDQFDEEDRAYVKAHHPDDYAKHFAAFDSK
Ga0210391_100050897	3300021433	Soil	MSRRVFVCVSGGVVGEVIVPPQRDGTWTVIDWDNIEADPEREWRQFDEKDKDFIRTNCPDDHTKFFSQFNRKENANNAGNLD
Ga0210390_110177463	3300021474	Soil	VCVSGGVVGELIVPPETNGTWTVIDWDNIESDPAREWGQFDEEDRAYVKANYPEDCATYFAAFENK
Ga0210402_101414032	3300021478	Soil	MSRRVYVSVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWDQFDEEERAHIKANYPDDYAKFFAQFEK
Ga0210410_109748141	3300021479	Soil	MGRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGHFDEEDKKYIRENYPDNCTKYFSQLMRDMGGL
Ga0210410_110299451	3300021479	Soil	EAMSRRVFVSVSGGVVDEVIVPKETDGTWTVIDWDNIESDPEREWDQFDEVDKAYIKANYADDYAKYFLQFTPS
Ga0210410_115892252	3300021479	Soil	DEVVIPPETDGTWTVIDWDNIEADPEREWRQFDEEDKDYIRKSCPDDHAKFFSQFNRKEKANNAGNLD
Ga0212123_100068343	3300022557	Iron-Sulfur Acid Spring	MSRRVYISVSGGVVDEVIVPAQTDGTWTVIDWDNIESDPAREWAHFDNQDRSHVKGNYPDYYTKYFVAFEHK
Ga0212123_100553557	3300022557	Iron-Sulfur Acid Spring	MSKRVFVCVSGGVVDKVIVPPQTDGTWTVIDWDNIEADPAREWGHFDEEDKKYICENYPDGCAKYFLQFMRDMGGR
Ga0209240_10967771	3300026304	Grasslands Soil	MTRRVFVCVSGGVVNEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIKANYTDDYAKYFAEFEGQ
Ga0209647_10764531	3300026319	Grasslands Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWGRFDEEDKKYIRVNYPVDCTKYFSQFMPDSGGL
Ga0209131_10025399	3300026320	Grasslands Soil	MSRRVFACVSGGVVDEAIVPPQADGTWTVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCCKYFSQFMRDMGGR
Ga0209131_10112052	3300026320	Grasslands Soil	MSRRVFVSVSGGVVDEVIVPKETDGTWTVIDWDNIESDPAREWGHFDEEDKVYIKANYPEDYAKYFAEFEGQ
Ga0257163_10116461	3300026359	Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDSAREWGQVDEEDKKYIRENYPDDCTKYFSQFMFETGGL
Ga0257163_10148542	3300026359	Soil	MSRRVFVCVSGGVVDEVIVPPQSDGTWTVIDWDNIESDPVREWGQFDEEDRAYVRANYPDDYAKYFAAFENK
Ga0209648_100130102	3300026551	Grasslands Soil	MSKRVFVCVSGGVVDEVIVPPETNGTWTVIDWDNIESDLAREWDQFDEEDRAYVKANYPEDYAKYFAAFESK
Ga0209648_101809313	3300026551	Grasslands Soil	MSRRVFICVSGGVVDEVIVPPLTDGTWTVIDWDNIESDPAREWGHFDEKDKKYIKQNYPDDCAKYFSQLMRDKGGL
Ga0179593_11186444	3300026555	Vadose Zone Soil	MGRRVFVCVSGGVVEEVMVPPQTDGTWTVIDWDNIESSDPVREWDQFDEEDRGYVKANYSDDYAKYFAAFDRK
Ga0179587_110541601	3300026557	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPLQTDGTWTVVDWDNIESDPAREWGHFDEEDKAYIKANYADDYAKYFSQFAPS
Ga0209004_10070823	3300027376	Forest Soil	MSKRVFVCVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWSHFDEEVKKYVKENYPDNYAKYFSEFMREMGGR
Ga0209388_10395473	3300027655	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPPQTDGTWIVIDWDNIESDPAREWGHFDEEDKKYIKEHYPDDCAKYFSQFMRDMGGR
Ga0208990_10365372	3300027663	Forest Soil	MRRVFVCDSGGLVDEVIVRPQTDGTWTVIDWDNIESDPAREWDQFDAKDRVYVEANYPDDYVKFFAQFEK
Ga0209447_100687061	3300027701	Bog Forest Soil	MSRRVFVYVSRGVVDEVIVPPQTDGTWTVIDWDNIESDPEREWRQVNEEDRAYIMRNYGDDYAKFFSQIDRKEDTDD
Ga0209067_105514741	3300027898	Watersheds	MSHRVYVSVSGGVVDEVIVPPETNGTWTVIDWDNIESDPTREWGQFDEEDRAYVKANYPEDYAKYFATFENK
Ga0209488_101669262	3300027903	Vadose Zone Soil	MSRRVFVCVSGGVVEEVIVPPQTDGTWTVIDWDNIESDPAREWGQFDEEDKVYIQVNYPEDYARYFAEFEGK
Ga0265354_10290531	3300028016	Rhizosphere	MSRRVFICVSGGVVDEVIVPPVTDRTWTVIDWDNIEADPEREWRQFDEEDKKHIKAKCPDDYAKFFSQFDRKENANNAGNLD
Ga0137415_101617996	3300028536	Vadose Zone Soil	MSRRVFISVSGGVVDEVIVPPQTDGTWTVIDWDNIESDPAREWDRFDEEDKKYIKENYPDDCIKYFSQFMPGTGGR
Ga0137415_111545621	3300028536	Vadose Zone Soil	MSRRVFVCVSGGVVDEVIVPKETDGTWTVIDWDNIESGPAREWGQFDEEDKMYIKANYPEDYEKYFAEFEGK
Ga0073994_100356552	3300030991	Soil	MSRRVFVSVSGGVVDEVIVPPQTDGTWTVIDWDNLESDPAREWGHFDEEDKKYLRENYPDDCTKYFSQFMHDTGGL
Ga0265760_102421392	3300031090	Soil	MSRRVFICVSGGVVDEVIVPPVTDRTWTVIDWDNIEADPEREWRQFDEEDKDYIRKKCPDDHAKFFSQFNRKGNANNAGNLD
Ga0265320_102957631	3300031240	Rhizosphere	CVSGGVVDVVVVPPVTDGTWTVIDWDNIESDPEREWLHFDEEARAYVLATYPEEVQRYFPKYIGSVS
Ga0307478_100013224	3300031823	Hardwood Forest Soil	MSRRVLVSVSGGVVDEVVVPPETDGTWTVIDWGNIEADPEREWRQFDKEDKDYIRKSCPDDHAKFFSQFNRKENANNAGNLD
Ga0307479_102656822	3300031962	Hardwood Forest Soil	MSKRVFVCVSGGVVDEVIVPPETNGTWTVIDWDNIESDPAREWGQFDEEDRGYTKANYPDDYAKYFAAFEGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087282

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences