Scaffold Ga0212123_10003224

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10003224
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34986
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013543	Metagenome / Metatranscriptome	270	Y
F025234	Metagenome / Metatranscriptome	202	Y
F060162	Metagenome / Metatranscriptome	133	Y
F082997	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000322418	F013543	GAG	MRRSEFCRSRRLSFGTLNRHLKKQRSKKKSRASSSGRLVPVELAARKSPTQHESSCGLAVVLPGGRRIEVQHDFDAYAFERLVGILERA
Ga0212123_100032242	F082997	GGAG	MAVSTPAAYGMYPHDVELHQVVQTLNQSGFGKEDICMMVSPSHPIATTVREANILNADPQASAIAAGLIGWLMKFGAVMIPTVGLYIRSQAFLHALGVRKDSPGLRGNSRALVGLGFSEGDAIRFERQLRDMGALVYVTCSESDRTTRAIELLRRTGARETAALEKEVALEAVA
Ga0212123_1000322425	F060162	GGAGG	MNMNVGWQELYQAAMLELRPDELRRRIDDAEKAIQQRIVELTQNDASSEEERRAIDDALRGLRALASTECKPPLSTHSGLAPLP
Ga0212123_1000322432	F025234	AGGAG	MRRDDLMKADLFSEILLLGSGVAIAVALVMVVVAVLTGAAALQ