Scaffold Ga0212123_10001856

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001856
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55162
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (89.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006203	Metagenome / Metatranscriptome	379	Y
F012137	Metagenome / Metatranscriptome	283	Y
F020975	Metagenome / Metatranscriptome	221	Y
F033529	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000185611	F033529	GGA	LLALLFVSVADFSLDSARFDLVVMTAALAIFLSGGLRSP
Ga0212123_1000185613	F012137	N/A	MFRISISDTPSRRTLLVEGTLIGPWIAELGTTWRNASQDLDRRKLVIDLTNLTVISHEGEGAIFDLMMKGANFSCGGVLMRHVLKELARKKPEEPPRR
Ga0212123_1000185618	F006203	GGAGG	MLESTVALLGGLCLSALTLLMSVCIVGSIVAALRAVSSRGSATVSTRK
Ga0212123_100018566	F020975	AGGAG	VRGRNTTTPNAKIRLFFVDAAFLAMTTFVVGAHAQLSQGSQTDLTTTLEPLRPGVTASQIFDELLAHNALRAATLVNYDAFRTYQVVDLKGKVHAEEIGQMEYRAPDQKKFVVTSEKGSALVRRLALNALIASEIETTAGKQHHDSAISPTNYTLDLLGEQQVGPYHCFVAQAIPKRSDKYLFEGKVWIDAEDYAVVRIEGHPAKKLSFWIERADFVRQYQKIDSFWLPQRDVTFVQVRLYGKKALTIDHRDYSVNSLGGNDESAAGAPRF