NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001502

Scaffold Ga0212123_10001502


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001502 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64448
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (64.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000564Metagenome / Metatranscriptome1021Y
F001107Metagenome / Metatranscriptome776Y
F015496Metagenome / Metatranscriptome254Y
F069872Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000150211F069872GGAGMAKITLYREGKSQEYSNAHDITISPAGVLTFHWEVSEGGTFKKPRAYKFQTSVPFVVEEDLAGA
Ga0212123_1000150214F000564AGGAGMTINLTPEQGRRLQAVMSRGAYESVEEVVDAALAAMEQRTLPGFAGTPDELDALLAEGLASKELTETDFWDSVNKRKDILLAERKTGLRP
Ga0212123_1000150239F001107N/AMRLPRPASAAPRSCASFFLAVGHAHGWAEFSGRGLHALAIIVLPAVLPAMFLPRSTREEIYNILWALVFGFATLNILSLGARRFEEGKTGLNFGEILAILVVLVSIVLLGWELLYVFGILPIRLTSR
Ga0212123_1000150253F015496GGAMYNVDLLRQLCRDIANEKDPQKEQDLVSVLQAVMKEDQEEIRVRMAFLAKKYADAISDSKAAD

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