Scaffold Ga0212123_10001502

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001502
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64448
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (64.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000564	Metagenome / Metatranscriptome	1021	Y
F001107	Metagenome / Metatranscriptome	776	Y
F015496	Metagenome / Metatranscriptome	254	Y
F069872	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000150211	F069872	GGAG	MAKITLYREGKSQEYSNAHDITISPAGVLTFHWEVSEGGTFKKPRAYKFQTSVPFVVEEDLAGA
Ga0212123_1000150214	F000564	AGGAG	MTINLTPEQGRRLQAVMSRGAYESVEEVVDAALAAMEQRTLPGFAGTPDELDALLAEGLASKELTETDFWDSVNKRKDILLAERKTGLRP
Ga0212123_1000150239	F001107	N/A	MRLPRPASAAPRSCASFFLAVGHAHGWAEFSGRGLHALAIIVLPAVLPAMFLPRSTREEIYNILWALVFGFATLNILSLGARRFEEGKTGLNFGEILAILVVLVSIVLLGWELLYVFGILPIRLTSR
Ga0212123_1000150253	F015496	GGA	MYNVDLLRQLCRDIANEKDPQKEQDLVSVLQAVMKEDQEEIRVRMAFLAKKYADAISDSKAAD