Metagenome / Metatranscriptome Family F069872

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069872
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	66 residues
Representative Sequence	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKLQTSVPFVVEEDVAGA
Number of Associated Samples	93
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.36 %
% of genes near scaffold ends (potentially truncated)	12.20 %
% of genes from short scaffolds (< 2000 bps)	68.29 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.610 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (32.520 % of family members)
Environment Ontology (ENVO)	Unclassified (23.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.537 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 42.39% Coil/Unstructured: 57.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04073	tRNA_edit	21.95
PF07478	Dala_Dala_lig_C	15.45
PF01862	PvlArgDC	5.69
PF13290	CHB_HEX_C_1	4.88
PF13287	Fn3_assoc	4.07
PF00291	PALP	3.25
PF08281	Sigma70_r4_2	3.25
PF01916	DS	2.44
PF13490	zf-HC2	1.63
PF03796	DnaB_C	0.81
PF16538	FlgT_C	0.81
PF03783	CsgG	0.81
PF16576	HlyD_D23	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	5.69
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	2.44
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.81
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.81
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.61 %
Unclassified	root	N/A	24.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.61 %
Unclassified	root	N/A	24.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.61 %
Unclassified	root	N/A	24.39 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	39.84 %
Unclassified	root	N/A	24.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.39 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.33 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.39 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	20.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.39 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.07 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5.69 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.07 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5.69 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001154\|JGI12636J13339_1019965	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300001174\|JGI12679J13547_1009686	Not Available	593	Open in IMG/M
3300001180\|JGI12695J13573_1002989	Not Available	1148	Open in IMG/M
3300001180\|JGI12695J13573_1015386	Not Available	539	Open in IMG/M
3300001593\|JGI12635J15846_10088292	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300001593\|JGI12635J15846_10088510	Not Available	2247	Open in IMG/M
3300001593\|JGI12635J15846_10180425	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300001593\|JGI12635J15846_10317986	Not Available	967	Open in IMG/M
3300001593\|JGI12635J15846_10515967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300001593\|JGI12635J15846_10537950	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300001661\|JGI12053J15887_10052479	Not Available	2278	Open in IMG/M
3300001661\|JGI12053J15887_10170285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300001661\|JGI12053J15887_10181107	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1084	Open in IMG/M
3300002245\|JGIcombinedJ26739_100395949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1260	Open in IMG/M
3300002245\|JGIcombinedJ26739_100457572	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300002914\|JGI25617J43924_10147642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300002917\|JGI25616J43925_10031075	Not Available	2360	Open in IMG/M
3300005167\|Ga0066672_10069375	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300005176\|Ga0066679_10166721	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300005177\|Ga0066690_10775790	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005436\|Ga0070713_100602347	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300005445\|Ga0070708_100091736	All Organisms → cellular organisms → Bacteria	2767	Open in IMG/M
3300005454\|Ga0066687_10364296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300005468\|Ga0070707_100182889	Not Available	2044	Open in IMG/M
3300005518\|Ga0070699_100340376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1350	Open in IMG/M
3300005598\|Ga0066706_10925524	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300006028\|Ga0070717_11130626	Not Available	713	Open in IMG/M
3300006797\|Ga0066659_11371153	Not Available	590	Open in IMG/M
3300006893\|Ga0073928_10009258	All Organisms → cellular organisms → Bacteria → Acidobacteria	12041	Open in IMG/M
3300006893\|Ga0073928_10604783	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300007255\|Ga0099791_10572544	Not Available	551	Open in IMG/M
3300007258\|Ga0099793_10051653	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300007258\|Ga0099793_10198799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300009029\|Ga0066793_10402271	Not Available	786	Open in IMG/M
3300009038\|Ga0099829_10141353	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300009038\|Ga0099829_11145204	Not Available	645	Open in IMG/M
3300009088\|Ga0099830_11201096	Not Available	630	Open in IMG/M
3300010860\|Ga0126351_1059645	Not Available	591	Open in IMG/M
3300011270\|Ga0137391_10067361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3071	Open in IMG/M
3300011270\|Ga0137391_10420711	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300011271\|Ga0137393_10382867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1204	Open in IMG/M
3300012200\|Ga0137382_10335282	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300012202\|Ga0137363_10350984	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300012203\|Ga0137399_11235785	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012203\|Ga0137399_11244668	Not Available	627	Open in IMG/M
3300012205\|Ga0137362_11055168	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300012209\|Ga0137379_10765384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300012211\|Ga0137377_10522699	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300012351\|Ga0137386_10015279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5154	Open in IMG/M
3300012917\|Ga0137395_10606455	Not Available	791	Open in IMG/M
3300012923\|Ga0137359_10263811	Not Available	1536	Open in IMG/M
3300012923\|Ga0137359_11584533	Not Available	543	Open in IMG/M
3300012925\|Ga0137419_10584529	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012927\|Ga0137416_10376017	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300014501\|Ga0182024_10003106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	40163	Open in IMG/M
3300015193\|Ga0167668_1000539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7196	Open in IMG/M
3300019888\|Ga0193751_1005429	All Organisms → cellular organisms → Bacteria	7145	Open in IMG/M
3300019888\|Ga0193751_1012728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4371	Open in IMG/M
3300019888\|Ga0193751_1208947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	645	Open in IMG/M
3300020199\|Ga0179592_10063228	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300020579\|Ga0210407_10001211	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	24916	Open in IMG/M
3300020579\|Ga0210407_10006739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8745	Open in IMG/M
3300020580\|Ga0210403_10077884	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
3300020581\|Ga0210399_10053889	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3235	Open in IMG/M
3300020583\|Ga0210401_10567733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300020583\|Ga0210401_10689962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300021168\|Ga0210406_10012441	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8237	Open in IMG/M
3300021171\|Ga0210405_10215927	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300021432\|Ga0210384_10228259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1675	Open in IMG/M
3300021479\|Ga0210410_10286922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1477	Open in IMG/M
3300021559\|Ga0210409_10083330	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2961	Open in IMG/M
3300022557\|Ga0212123_10001502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	64448	Open in IMG/M
3300022557\|Ga0212123_10029405	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5717	Open in IMG/M
3300025922\|Ga0207646_10129375	All Organisms → cellular organisms → Bacteria	2272	Open in IMG/M
3300025922\|Ga0207646_10247454	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300026309\|Ga0209055_1111848	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300026318\|Ga0209471_1090800	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300026333\|Ga0209158_1136545	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300026494\|Ga0257159_1053740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300026496\|Ga0257157_1066678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300026514\|Ga0257168_1060654	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300026514\|Ga0257168_1094437	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300026532\|Ga0209160_1250884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300026551\|Ga0209648_10089084	All Organisms → cellular organisms → Bacteria	2555	Open in IMG/M
3300026555\|Ga0179593_1133076	All Organisms → cellular organisms → Bacteria	3483	Open in IMG/M
3300026557\|Ga0179587_10703764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300027381\|Ga0208983_1076696	Not Available	630	Open in IMG/M
3300027383\|Ga0209213_1078574	Not Available	616	Open in IMG/M
3300027521\|Ga0209524_1013495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1655	Open in IMG/M
3300027535\|Ga0209734_1027584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1054	Open in IMG/M
3300027537\|Ga0209419_1093961	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300027562\|Ga0209735_1002484	All Organisms → cellular organisms → Bacteria	3260	Open in IMG/M
3300027562\|Ga0209735_1016131	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300027587\|Ga0209220_1014425	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2104	Open in IMG/M
3300027591\|Ga0209733_1008993	All Organisms → cellular organisms → Bacteria	2610	Open in IMG/M
3300027591\|Ga0209733_1009844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2504	Open in IMG/M
3300027591\|Ga0209733_1073768	Not Available	882	Open in IMG/M
3300027616\|Ga0209106_1078629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300027629\|Ga0209422_1005603	Not Available	3083	Open in IMG/M
3300027629\|Ga0209422_1014567	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300027633\|Ga0208988_1062014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946	Open in IMG/M
3300027645\|Ga0209117_1000870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11239	Open in IMG/M
3300027645\|Ga0209117_1069782	Not Available	1003	Open in IMG/M
3300027660\|Ga0209736_1001210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8501	Open in IMG/M
3300027667\|Ga0209009_1036436	Not Available	1219	Open in IMG/M
3300027669\|Ga0208981_1057691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	989	Open in IMG/M
3300027671\|Ga0209588_1061052	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300027674\|Ga0209118_1010644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3145	Open in IMG/M
3300027674\|Ga0209118_1125751	Not Available	715	Open in IMG/M
3300027681\|Ga0208991_1014658	All Organisms → cellular organisms → Bacteria → Acidobacteria	2352	Open in IMG/M
3300027738\|Ga0208989_10014276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2721	Open in IMG/M
3300027846\|Ga0209180_10045800	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300028047\|Ga0209526_10109476	Not Available	1943	Open in IMG/M
3300030991\|Ga0073994_10055300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300030991\|Ga0073994_10077877	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300031023\|Ga0073998_11640858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300031057\|Ga0170834_110069382	Not Available	554	Open in IMG/M
3300031708\|Ga0310686_108013127	Not Available	528	Open in IMG/M
3300031718\|Ga0307474_10014080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5785	Open in IMG/M
3300031720\|Ga0307469_11184742	Not Available	721	Open in IMG/M
3300031754\|Ga0307475_10095741	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300031962\|Ga0307479_10070175	All Organisms → cellular organisms → Bacteria → Acidobacteria	3383	Open in IMG/M
3300031962\|Ga0307479_11177624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.75%
Aquatic	Environmental → Aquatic	3.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.25%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.91%
Loam	Environmental → Terrestrial → Soil → Loam	38.21%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.63%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	32.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.69%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.25%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	32.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.06%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.44%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001174	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1	Environmental	Open in IMG/M
3300001180	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031023	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12636J13339_10199652	3300001154	Forest Soil	MTKITLYRDGKPQEYANAHDITISSAGVLTFHWEMKDGGSFKKPRAYKFQTSVPFVVEEDVVGG*
JGI12679J13547_10096862	3300001174	Forest Soil	MVKITLYHQGQPHEYVNAHDVTISPAGVLTFYREVSQGGSFKKPRSCKVQTSVPFVVEDDDAAIS*
JGI12695J13573_10029892	3300001180	Forest Soil	MRNDTFSVMAKITLYHDGKPQEYINARDVTISPAGVLTFYWEISQGGSFKKPRLYKLQTSVPFVVEEEDAGA*
JGI12695J13573_10153862	3300001180	Forest Soil	VQYFSAASDSNFSTMVKITLYHQGQPHEYVNAHDVTISPAGVLTFYREVSQGGSFKKPRSCKVQTSVPFVVEDDDAAIS*
JGI12635J15846_100882924	3300001593	Forest Soil	MTKITLYRDGKPQEYTNAHDIMISPAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA*
JGI12635J15846_100885101	3300001593	Forest Soil	MAKITLYREGKSQEYTNAHDITISPAGILTFHWEVSEGGSFKKPRAYKFQTSVPFVVEED
JGI12635J15846_101804252	3300001593	Forest Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKLQTSVPFVVEEDVAGA*
JGI12635J15846_103179862	3300001593	Forest Soil	MTKITLYHEGNPQEYVNAHDITISPAGVLTFYREMSEGGTFKKPISYKLQTSVPFVIEEEAVSA*
JGI12635J15846_105159671	3300001593	Forest Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPRAYKFQTSVPFVVEED
JGI12635J15846_105379502	3300001593	Forest Soil	MTKITLYRDGKPQEYTNAHDITISSTGILTFYWEVQEGGSFKKPRSYKLQTSVPFVVEEEVAGA*
JGI12053J15887_100524791	3300001661	Forest Soil	MTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA*
JGI12053J15887_101702853	3300001661	Forest Soil	MVKITLYRDAKPQEYTHAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA*
JGI12053J15887_101811072	3300001661	Forest Soil	MAKIILYYEDKPQEYANAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG*
JGIcombinedJ26739_1003959491	3300002245	Forest Soil	MAKITLYREGKSQEYTNAHDITISPAGILTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVAGA*
JGIcombinedJ26739_1004575721	3300002245	Forest Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVAGA*
JGI25617J43924_101476423	3300002914	Grasslands Soil	MAKITLYREGKSQEYTNAHDIXISPAGXLTFHWEVSEGGSFKKPRAYKFQTSVPFV
JGI25616J43925_100310753	3300002917	Grasslands Soil	MAKITLYQEGKPQEYANARDITISPAGILTFYREVSEGGSFKKPRSYKLQTSVPFIVEEDVAKP*
Ga0066672_100693753	3300005167	Soil	MTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0066679_101667213	3300005176	Soil	MTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0066690_107757902	3300005177	Soil	MTKITLYRDGKPHEYANAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0070713_1006023472	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFRKPKAYKLQTSLPFVVEEDVASA*
Ga0070708_1000917363	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTKITLYRDGKPQEYTDAHDITISSAGVLTFHWELKESGSFKKPKSYKFQTSVPFVIEEDVAGG*
Ga0066687_103642962	3300005454	Soil	MTKITLYRDGKPHEYANAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0070707_1001828892	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVKITLYREGKPQEYTDAHDITISPAGVLTFHWELKESGSFKKPKTYKFQTSVPFVIEEDVAGG*
Ga0070699_1003403762	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVVFLLGAPRDMVKITLYREGKPQEYTDAHDITISPAGVLTFHWELKESGSFKKPKTYKFQTSVPFVIEEDVAGG*
Ga0066706_109255242	3300005598	Soil	KITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0070717_111306261	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MVKITLYREGKPQEYTDAHEITISPAGVLTFHWELKESGSFKKPKAYKFQTSVPFVIEEDVAGG*
Ga0066659_113711532	3300006797	Soil	MTKITLYRDGKPHEYANAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0073928_100092584	3300006893	Iron-Sulfur Acid Spring	MAKITLYREGKSQEYSNAHDITISPAGVLTFHWEVSEGGTFKKPRAYKFQTSVPFVVEEDLAGA*
Ga0073928_106047831	3300006893	Iron-Sulfur Acid Spring	MAKITLYHEGKPQEYANAHDTTISPAGVLTFYREISEGGSFKKPRAYKLQTSVPFIVEEDVANA*
Ga0099791_105725441	3300007255	Vadose Zone Soil	MTKIILYRDGKPQEYTNAHDITISSAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVASA*
Ga0099793_100516531	3300007258	Vadose Zone Soil	MTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA*
Ga0099793_101987991	3300007258	Vadose Zone Soil	MVIFLVGVPRDMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0066793_104022712	3300009029	Prmafrost Soil	MAKITLYHEGKPQEYANAHDITISTAGVLTFYREISEGGSFKKPRAYKLQTSVPFI
Ga0099829_101413533	3300009038	Vadose Zone Soil	MVVFLLGAPRDMVKITLYREGKPQEYNDAHDITISPAGVLTFQWEIKESGSFKKPRAYKFQTSVPFVIEEDVAGG*
Ga0099829_111452041	3300009038	Vadose Zone Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVREGGSFKKPRAHKFQTSVPFVVEEDVAGA*
Ga0099830_112010961	3300009088	Vadose Zone Soil	MVVFLLGAPRDMVKITLYREGKPQEYTDAHDITISPAGVLTFHWELKESGSFKKPKAYKFQTSAPFVIEEDVAGA*
Ga0126351_10596452	3300010860	Boreal Forest Soil	MTKITLYRDGKPQEYTNAHDITISSAGILTFHWEREEGGSFKKPRSYKLQTSVPFVVEEEIAGA*
Ga0137391_100673615	3300011270	Vadose Zone Soil	MVVFLLGAPRDMVKITLYREGKPQEYNDAHDITISPAGVLTFQWEIKESGSFKKPRAYKFQTSVPFVIEEDVAGD*
Ga0137391_104207111	3300011270	Vadose Zone Soil	MTKITLYRDGKPQEYTNAHDITISPGGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0137393_103828671	3300011271	Vadose Zone Soil	MVVFLLGARRDMVKITLYREGKPQEYNDAHDITISPAGVLTFHWEIKESGSFKKPRAYKFQTSVPFVIEEDVAGG*
Ga0137382_103352821	3300012200	Vadose Zone Soil	MVTFLAGAPRDMTRITLYRDGKPHEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0137363_103509842	3300012202	Vadose Zone Soil	MVTFLAGVPRDMTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0137399_112357852	3300012203	Vadose Zone Soil	YRDGKPQEYTNAHDITISSAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA*
Ga0137399_112446682	3300012203	Vadose Zone Soil	MVTFLAGVPRDMTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0137362_110551682	3300012205	Vadose Zone Soil	MVTFLVGVPRDMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0137379_107653842	3300012209	Vadose Zone Soil	MTRITLYRDGKPHEYTNAHEITISPAGVLSFHWELHEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0137377_105226992	3300012211	Vadose Zone Soil	MVTFLAGVPRDMTRITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0137386_100152794	3300012351	Vadose Zone Soil	MVTFLAGVPRDMTRITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA*
Ga0137395_106064551	3300012917	Vadose Zone Soil	MAKITLYRDGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPRAYKLQTSVPFVVEEDVAGA*
Ga0137359_102638112	3300012923	Vadose Zone Soil	MTKITLYRDGKPHEYTNAHDITISSAGVLTFHWEISEGGSFKKPKAYKFQTSVPFVVEEDVAGA*
Ga0137359_115845331	3300012923	Vadose Zone Soil	MVTFLVGVPRDMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVASA*
Ga0137419_105845292	3300012925	Vadose Zone Soil	MVTFLVGVPRDMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFRKPRAYKMQTSLPFVVEEDVAGA*
Ga0137416_103760171	3300012927	Vadose Zone Soil	MTKITLYRDGKPHKYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA*
Ga0182024_1000310619	3300014501	Permafrost	MVKITLYHQGQPHEYVNAHDVTISPAGVLTFYREVSQGGSFKKPRSCKVQASVPFVVEDDDAPIS*
Ga0167668_10005397	3300015193	Glacier Forefield Soil	MAKITLYHEGKPQEHANAHDITISPAGVLTFYREISEGGSFKKPRAYKLQTSVPFVVEEDVAKA*
Ga0193751_10054295	3300019888	Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFRKPKAYKLQTSVPFVVEEDVAGA
Ga0193751_10127283	3300019888	Soil	MVKITLYREGKPQEYNDAHDITISPAGVLTFQWEIKESGSFKKPRAYKFQTSVPFVIEEDVAGG
Ga0193751_12089471	3300019888	Soil	TKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFKKPKAYKFQTSVPFVVEEEVAGA
Ga0179592_100632282	3300020199	Vadose Zone Soil	MTKITLYRDGKPHEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA
Ga0210407_1000121118	3300020579	Soil	MVKITLYRDGKPQEYTNAHDVTISPAGVLSFHWEIQEGGSFKKPRSYKLQTSVPFVVEEEVAGA
Ga0210407_100067397	3300020579	Soil	MAKITLYYDGKPQEYANARDITISPAGVLTFYREISEGGSFKKPRVYRFQTSVPFIVEEDVASA
Ga0210403_100778842	3300020580	Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFKKPKAYKFQTSVPFVVEEDVAAG
Ga0210399_100538892	3300020581	Soil	MTKITLYRDGKPQDYTNAHDITISPAGVLTFYWEISEGGTFKKPKAYKFQTSVPFVVEEDVAGG
Ga0210401_105677332	3300020583	Soil	MAKITLYREGKSQEYSNAHDITISPAGVLTFHWEMSEGGSFKKPKAYKFQTSVPFVVEEDVAGG
Ga0210401_106899623	3300020583	Soil	MIKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFKKPKAYKIQTSVPFVVEEDVARG
Ga0210406_100124415	3300021168	Soil	MVKITLYRDGKPQEYTNAHDITISPAGVLSFHWEIQEGGSFKKPRSYKLQTSVPFVVEEEVAGA
Ga0210405_102159273	3300021171	Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPRAYKFQTSVPFIVEEDVAGA
Ga0210384_102282591	3300021432	Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPKAYKFQTSVPFVVEEDVAGG
Ga0210410_102869221	3300021479	Soil	MAKITLYREGKSQEYSNAHNITISPAGVLTFHWEMSEGGSFKKPKAYKFQTSVPFVVEEDVAGG
Ga0210409_100833303	3300021559	Soil	MVKITLYREGKPQDYTDAHDITISPAGVLTFHWEIKESGSFKKPKAFKFQTSVPFVIEEDVAGG
Ga0212123_1000150211	3300022557	Iron-Sulfur Acid Spring	MAKITLYREGKSQEYSNAHDITISPAGVLTFHWEVSEGGTFKKPRAYKFQTSVPFVVEEDLAGA
Ga0212123_100294052	3300022557	Iron-Sulfur Acid Spring	MAKITLYHEGKPQEYANAHDTTISPAGVLTFYREISEGGSFKKPRAYKLQTSVPFIVEEDVANA
Ga0207646_101293753	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTKITLYRDGKPQEYTDAHDITISSAGVLTFHWELKESGSFKKPKSYKFQTSVPFVIEEDVAGG
Ga0207646_102474542	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVKITLYREGKPQEYTDAHDITISPAGVLTFHWELKESGSFKKPKTYKFQTSVPFVIEEDVAGG
Ga0209055_11118481	3300026309	Soil	FLIQRHNRFPWRAMVTFLAGVPRDMTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA
Ga0209471_10908002	3300026318	Soil	MTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA
Ga0209158_11365452	3300026333	Soil	TKITLYRDGKPHEYANAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA
Ga0257159_10537402	3300026494	Soil	MAKITLYREGKSQEYTKAHDITISPAGVLTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVASA
Ga0257157_10666782	3300026496	Soil	MVKITLYRDAKPQEYTNAHDITISSAGVLTFHWEIQEGGSFRKPRAYKMQTSLPFVVEEDVAGA
Ga0257168_10606542	3300026514	Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFKKPKAYKFQTSVPFVVEEDVAGG
Ga0257168_10944371	3300026514	Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVAGA
Ga0209160_12508842	3300026532	Soil	MVTFLAGVPRDMTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA
Ga0209648_100890842	3300026551	Grasslands Soil	MAKITLYREGKSQEYTNAHDITISPAGALTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVAGA
Ga0179593_11330763	3300026555	Vadose Zone Soil	MTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA
Ga0179587_107037641	3300026557	Vadose Zone Soil	MTKITLYRDGKPHEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEED
Ga0208983_10766962	3300027381	Forest Soil	MVIFLVGVPRDMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA
Ga0209213_10785742	3300027383	Forest Soil	MVKITLYRDAKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA
Ga0209524_10134951	3300027521	Forest Soil	MTKITLYRDGKPQEYTNAHDIMISPAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA
Ga0209734_10275843	3300027535	Forest Soil	MAKITLYREGKSQEYTNAHDITISSAGVLTFHWEISEGGSFKKPRAYKLQTSVPFVVEEDVAGG
Ga0209419_10939612	3300027537	Forest Soil	LDMTKITLYRDGKPQEYTNAHDIMISPAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA
Ga0209735_10024841	3300027562	Forest Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFKKPKAYKLQTSVPFVVEEDVAGA
Ga0209735_10161312	3300027562	Forest Soil	MTKITLYRDGKPQEYTNAHDITISPAGVLTFHWEISEGGSFRKPKACKFQTSLPFVVEEDVAGG
Ga0209220_10144252	3300027587	Forest Soil	MVISLSMAKITLYYEGKRQDYDNAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG
Ga0209733_10089934	3300027591	Forest Soil	MRNDTFSVMAKITLYHDGKPQEYINARDVTISPAGVLTFYWEISQGGSFKKPRLYKLQTSVPFVVEEEDAGT
Ga0209733_10098442	3300027591	Forest Soil	MVKITLYHQGQPHEYVNAHDVTISPAGVLTFYREVSQGGSFKKPRSCKVQTSVPFVVEDDDAAIS
Ga0209733_10737682	3300027591	Forest Soil	MAKITLYHEGKPQEYANAHDITISPAGVLTFYREISEGGSFKKPRAYKLQTSVPFVVEEDVANA
Ga0209106_10786292	3300027616	Forest Soil	MTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA
Ga0209422_10056033	3300027629	Forest Soil	MRNDTFSVMAKITLYHDGKPQEYINARDVTISPAGVLTFYWEISQGGSFKKPRLYKLQTSVPFVVEEEDAGA
Ga0209422_10145673	3300027629	Forest Soil	MTKITLYRDGKPQEYTNAHDITISSTGILTFYWEVQEGGSFKKPRSYKLQTSVPFVVEEEVAGA
Ga0208988_10620141	3300027633	Forest Soil	MVKITLYRDAKPQEYTHAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSLPFVVEEDVAGA
Ga0209117_100087010	3300027645	Forest Soil	MAKITLYHEGKPQEYANAHDITISPAGVLTFYREISEGGSFKKPRAYKFQTSVPFVVEEDVAKA
Ga0209117_10697821	3300027645	Forest Soil	MAKITLYYEGKPQEYDNAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG
Ga0209736_10012107	3300027660	Forest Soil	MAKITLYREGKSQEYTNAHDITISPAGILTFHWEVSEGGSFKKPRAYKFQTSVPFVVEEDVAGA
Ga0209009_10364361	3300027667	Forest Soil	MAKITLYHEGKPQEYANAHDITISTAGVLTFYREISEGGSFKKPRAYKLQTSVPFIVEEDVAKA
Ga0208981_10576912	3300027669	Forest Soil	MAKITLYYEGKPQEYANAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG
Ga0209588_10610522	3300027671	Vadose Zone Soil	MTKITLYRDGKPHEYTNAHDITISPAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVARA
Ga0209118_10106443	3300027674	Forest Soil	MTKITLYRDGKPQEYANAHDITISSAGVLTFHWEMKDGGSFKKPRAYKFQTSVPFVVEEDVVGG
Ga0209118_11257511	3300027674	Forest Soil	MVISLNMAKITLYYEGKPQEYDNAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG
Ga0208991_10146584	3300027681	Forest Soil	MAKIILYYEDKPQEYANAHDITISPAGVLTFYQEVSEGGSFKKPRAYKLQTSVPFIVEEDVAKG
Ga0208989_100142761	3300027738	Forest Soil	MAKITLYYEGKPQEYANAHDITISPAGVLTFYREVSEGGSFKKPRAYKLQTSVPFIVEEDIAKG
Ga0209180_100458004	3300027846	Vadose Zone Soil	MVVFLLGAPRDMVKITLYREGKPQEYNDAHDITISPAGVLTFQWEIKESGSFKKPRAYKFQTSVPFVIEEDVAGG
Ga0209526_101094762	3300028047	Forest Soil	MAKITLYHDGKPQEYANVRDITISPAGVLTFYREISEGGSFKKPRTYKLQTSVPFVVEEDVAKA
Ga0073994_100553002	3300030991	Soil	MTMTKITLYRDGKPQEYTNAHDITISSAGVLTFHWEIQEGGSFKKPRAYKMQTSVPFVVEEDVAGA
Ga0073994_100778772	3300030991	Soil	MAKITLYREGKSQEYANAHDITISPAGILTFHWEVSEGGTFKKPRAYKFQTSVPFVVEEDVAGA
Ga0073998_116408582	3300031023	Soil	MAKITLYREGKSQEYTNAHDITISPAGVLTFHWEVSEGGSFRKPKAYKFQTSVPFVVEED
Ga0170834_1100693821	3300031057	Forest Soil	MVKITLYREGKPQEYTDAHDITISPAGVLTFHWEINESGSFKKPKAYKFQTSVPFVIEEDVAGS
Ga0310686_1080131271	3300031708	Soil	MAKVTLYRDGKPQEYANAHDITISPAGILTFHWEIKEGGSFRKPRAYKFQTSVPFVVEEDVAGA
Ga0307474_100140801	3300031718	Hardwood Forest Soil	MVVFLNMAKITLYCDGKPQEYDNARDITISPAGVLTFYREISQGGSFKKPRVYKFQTSVPFIVEEDIASA
Ga0307469_111847421	3300031720	Hardwood Forest Soil	KITLYYDGKPQEYANARDITISPAGVLTFYREISEGGSFKKPRVYKFQTSVPFIVEEDVANA
Ga0307475_100957413	3300031754	Hardwood Forest Soil	MVKITLYREGKPQEYTDPHDITISPAGVLTFHWELKESGSFKKPKAYKFQTSVPFVIEEEASG
Ga0307479_100701754	3300031962	Hardwood Forest Soil	MAKITLYHEGKPQEYANAHDITISPAGVLTFYREIIEGGSFKKAKAYKLQTSVPFIVEEDVANA
Ga0307479_111776242	3300031962	Hardwood Forest Soil	MVKITLYREDKPQEYTDAHDITISPAGVLTFHWELKESGSFKKPKAYKFQTSVPFVIEEDVAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069872

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences