Scaffold Ga0212123_10000952

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000952
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85817
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (49.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000283	Metagenome / Metatranscriptome	1379	Y
F000336	Metagenome / Metatranscriptome	1274	Y
F026839	Metagenome / Metatranscriptome	196	Y
F068104	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000095210	F000336	N/A	MPSGGKKKHKKPSRKKSELDSALDQVGDESAAAAVKEFQDLLGEAKGDTSELVRQNAEDLERRLVLLKNREIDKEDFDYFVENQKSDLRVYVDGQPAQDQERAEKLTLHVLEIAATKVVPLLIMMI
Ga0212123_1000095211	F000283	AGGA	MNSTLVSRNVFLCAAAIFIASCGTATFTKTGSDATIESLRSFHLAFIDEFAVPGKKFNAAAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLKAQFDADAAHIKSKATRGKITPALASEMKKDVNKTYDHALGR
Ga0212123_1000095230	F026839	AGGA	MKTILMLIVGLMLAGCGSTGNHVRNRDAVDRNRYLVEHNAVDTICACP
Ga0212123_1000095233	F068104	GGAGG	MNSLKGHLVARDRFEFSFRALVDRTVREQNREDRRLAEQRATKHQFRARNSCILDGQNYRFARRLFLFARAQF