Scaffold Ga0212123_10000493

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000493
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129017
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (62.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002611	Metagenome / Metatranscriptome	543	Y
F007807	Metagenome / Metatranscriptome	344	Y
F024494	Metagenome / Metatranscriptome	205	Y
F027943	Metagenome / Metatranscriptome	193	Y
F053237	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000049316	F002611	AGGA	VKAYKIERIKSGMKFTCTQCAHSVSTLDFDAKGGNLRTQAATAINDHARKAHSAPMIISPSDSQQRTWR
Ga0212123_100004933	F027943	N/A	MGLIIVTVLVRILETMFVAGAIGSVVVLVLSGIEDLKLLFGREGQNHS
Ga0212123_1000049342	F024494	AGGAGG	LKLKSLAVMTLLVLGCSAAFGQSFSLGFLGFNGTQYCDYEVVNVSAPYAAGTHNLTTVCGQPVDAVMVGFKANIPLTSGATVVGNVVEMADNTFDASYNAYTGCQIDWVTKTQPSKLLFHYGWAIYFSCSGGSDYLLNYGYLTTMLGAKAQVGAKKTSFGTLANAKAMHKQ
Ga0212123_1000049375	F053237	N/A	MNNIGQYKPQAEPNRDLVECAIAEVLEIAQRQGITAADLIRMLDSGMRISDFLNATNVFARGGHTIDRDFS
Ga0212123_1000049385	F007807	AGTAG	MAVALELHNTGDSGVGAEVRALVEHGLSDRPGDWRVSIVGSRENDGWEMKILGPNGFERSYTLAGNAGEHQPFMIGNVLLRLLPATMPQD