Scaffold Ga0212123_10000471

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000471
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132141
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (86.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F000833	Metagenome / Metatranscriptome	871	Y
F025234	Metagenome / Metatranscriptome	202	Y
F051297	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000047127	F000065	GGA	MPHNANQPIPKLDKAPEPPLSHLGATPDSDRARKPPLADPAATDQELNPGDRVEGLGNFGMPTGDFGTVEQANEDDAVVKWDNDGRMRLRQPWLKKI
Ga0212123_100004713	F000833	GGAG	MSQSAFRSAVCCLLLILFPAQVMLAGETASAMLYTNGAAWLNGSEVPKSAAVFSGDMLQTRPDSTASIQSNGSSVMVLADSLVKFEGPAVELEHGAVRVTTSRGLAARAGEVTVKPAANTWTEFQVTDVDGRVQIAANKGDLTVQDDKGTTTVTQGQQTTRDDTTDTEKKKKKRRRGTGAAPAAGGGIMSSPPVVYGGLAVIGGAAIWILTRSEPPVSPACPSSSCP
Ga0212123_1000047152	F025234	AGGAG	MRKDELMKADLFSEILLLGSGVAIVVALGMVVLAAISSAAAVLQ
Ga0212123_1000047193	F051297	AGGAG	MKKSLFTAVVTMTCLLGLGISANAEDASGVVVKVPFEFVAGGKTLPAGTYSVGRLSPGMHPSLIIDSKDNGAFALVLPVVADGDSAGRTDLSFERVGGKYFLSKVATPAGVYTLLTTRAMTKLAQMNDHGVTSSSGN