Scaffold Ga0212123_10000189

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000189
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211163
• Total Scaffold Genes: 203
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (64.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007640	Metagenome / Metatranscriptome	347	Y
F012297	Metagenome / Metatranscriptome	282	Y
F015941	Metagenome	251	Y
F027271	Metagenome / Metatranscriptome	195	Y
F032412	Metagenome / Metatranscriptome	180	Y
F083995	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000189115	F032412	AGGAGG	VAFTVYCWLLCLYPGSYRDEFGAEMTSVFRAARSELPPALPAKISFYQREFCGLLSGAMRARFDHLFGPAIPFGRFSMQPQFRFPRSTVFLMLVIFAGVVLTIRMASSVAGDKVGSVWPSLISVLVFMVLTMCAAAAVVCGILHTLRRSGVHRLENVDRRMYSGESNSDQ
Ga0212123_1000018918	F007640	GGAGG	MIGRIANTVLRRSRQQARPPRKVCPFCFEREHIGGYYHIPNLIVEICQVHHALLTEERLAAGAEMKRQPHSIKSVEMALRSFAVTVRAFATALNKLCEGLEFCAEKLNLHDKQAQRRDQRHG
Ga0212123_10000189199	F027271	GGAGG	MASDPERVKKLSVAGAFCLFDKKLSSSGSGSIVWGVLNALIGAIILNANNSWGFVTLLLGLALIAAGVYEKKVRDPKVIIISAATLGGLALWNFTLIGLAAIGKVHLALGGRTLYWGIAQAWGSYTTWQTYHTYKMLRETSDPATVEQVRGYIDELKKVRADESLDLVEFEMNAGFVQGRRLYRLKPTEDLYLIAQYKAQFRSLQLEGISFIPRNEVSLTPLGEKWMSKKIKATVQLGPLNLQNVTITPEMAMRINPAVRAVAMSAT
Ga0212123_1000018949	F083995	GGAG	MMEPMVNSEVRELCKAVSQEEDSERLKSLLDELLTALDERQLVASLL
Ga0212123_1000018976	F015941	GGAG	MKTNSKSKAFLALVLAIAIAATGCSAQWINIALQDLPVLTQMALNIATLVSALASGQQASTADIAVIQNISAQASRDLNLLQTLYGEYKATPSAPTLQKIQNVIADLNQNLPTLIQSAHISNPTLSARITAAVNLILTTVNSFAALMPQSSAATSRKAPTHSLLHANDLKKQWNQQVCSPSGNSALDAAFAAGVLR
Ga0212123_1000018993	F012297	GGAGG	MKSMHYLYAAYIATWVIHGTYLTILVRKYSRVRKEMESLRK