Scaffold Ga0212123_10000145

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000145
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240753
• Total Scaffold Genes: 232
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 177 (76.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010343	Metagenome / Metatranscriptome	305	Y
F086247	Metagenome / Metatranscriptome	111	N
F087568	Metagenome / Metatranscriptome	110	N
F087654	Metagenome / Metatranscriptome	110	N
F087836	Metagenome / Metatranscriptome	110	N
F098108	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000145111	F086247	AGG	MMELVSFLAVGTGLLVLLLVAMRRQPSHAAGSAGELVTAKRTLESLQVGLLPAELVEQVFGRQDLAYISSIGSNKLTNLFMSERKRLALIWISQIRKQVRALKDFHVSRSRMFTHMSRWREFSIALDFAGLEIRCRVLQFLMQWRGPYAAPDFARRTALTAGRLCSILDQSLAFLTPGIPAQLGSESGADGTTL
Ga0212123_10000145217	F087654	GGAGG	MEPIKAFTLKRDLVAEYDEEYLEMKTSDLRNKLDALSRSNFRPQSEIKEIQNSLNPIKAGDVRTKRSIYQLAYRRYILICPDDELLSIILELKSRLYHLDRNGEEIWSPRKLEAIEHAVRLHEGSNHLRVEIETLAKAIDEGRFRMRRDDDLRRDFLVFAFRANLILFLILLCVLGIFVILKVDIHSQWRKLPVLLFGACGGMLSATMQYRRQRISPGDLRIEPVQLFFRSVLGAFAAGIVTLFLQLRIVDFPVLHVGVEDGTSLTSGAQYIVAFASGFAERIFFRSTERISSKRSETQPVAQPVAQHAAARSVAKSAAAGR
Ga0212123_10000145218	F087836	GGAGG	MKLQFFVLTLCLLAAAVFSLASQSNAQRTPKGQVHALQATSDKGGEHPGKTEISGPATVTCINAASEIPNGPQPSCYVTGPGFTGILNKGKTASLTGAGTVTLKCSGQGYMRCDARVDIPPPSK
Ga0212123_1000014531	F010343	AGG	MRRELKWIEEPNFWGWGCSECAWVFNATGTPTGNSLDEMKQNYEQRRDEEFAAHACAEHPGAKKTS
Ga0212123_1000014569	F098108	GAGG	MLILIAAITYCVIRFAAPGIRALVARRKAEPAMIASRIPIARPIAAPPQMLCNGCVYAHIVRGYARDEVMIACGYVFPAREVLFRVRECTDYRPKRERNRVEIANEGAVCILPLDETATDFHAIAAARDGEGEVESSYR
Ga0212123_1000014595	F087568	AGGA	MNRSTISGLILAVIGIILFAHQDIARLMKKRTVVHAASIRRVEAAQTAEQAFPLASLLAGFLFMSGVGLVAVGAHPIVLPRQENPDSQA