Metagenome / Metatranscriptome Family F087568

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087568
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	88 residues
Representative Sequence	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.91 %
% of genes near scaffold ends (potentially truncated)	25.45 %
% of genes from short scaffolds (< 2000 bps)	70.00 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.182 % of family members)
Environment Ontology (ENVO)	Unclassified (49.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 70.00% β-sheet: 0.00% Coil/Unstructured: 30.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF05532	CsbD	41.82
PF00664	ABC_membrane	15.45
PF01833	TIG	4.55
PF03928	HbpS-like	1.82
PF01966	HD	0.91
PF07992	Pyr_redox_2	0.91
PF01207	Dus	0.91
PF05163	DinB	0.91
PF13450	NAD_binding_8	0.91
PF10771	DUF2582	0.91
PF13581	HATPase_c_2	0.91
PF03992	ABM	0.91
PF07885	Ion_trans_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	41.82
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.91
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.27 %
Unclassified	root	N/A	21.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.45 %
Unclassified	root	N/A	21.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.27 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.27 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.27 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.27 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.64 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001098\|JGI12633J13313_102438	Not Available	992	Open in IMG/M
3300001167\|JGI12673J13574_1001682	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300001867\|JGI12627J18819_10032078	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300001867\|JGI12627J18819_10154611	Not Available	933	Open in IMG/M
3300002245\|JGIcombinedJ26739_100252607	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300005434\|Ga0070709_10022429	All Organisms → cellular organisms → Bacteria	3692	Open in IMG/M
3300005435\|Ga0070714_100521900	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300005436\|Ga0070713_100138345	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300005536\|Ga0070697_100052236	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300005538\|Ga0070731_10067272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2377	Open in IMG/M
3300005538\|Ga0070731_10089852	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300005538\|Ga0070731_10979537	Not Available	560	Open in IMG/M
3300005541\|Ga0070733_10159972	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300005542\|Ga0070732_10009344	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5356	Open in IMG/M
3300005542\|Ga0070732_10051623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2377	Open in IMG/M
3300005602\|Ga0070762_10009635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4813	Open in IMG/M
3300005602\|Ga0070762_10038061	All Organisms → cellular organisms → Bacteria → Acidobacteria	2608	Open in IMG/M
3300005921\|Ga0070766_10021294	Not Available	3449	Open in IMG/M
3300006028\|Ga0070717_10168020	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300006175\|Ga0070712_100374261	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300006176\|Ga0070765_100328949	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300006893\|Ga0073928_10000683	All Organisms → cellular organisms → Bacteria	74752	Open in IMG/M
3300011120\|Ga0150983_10646423	Not Available	537	Open in IMG/M
3300011120\|Ga0150983_13766214	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300012181\|Ga0153922_1001099	All Organisms → cellular organisms → Bacteria	9812	Open in IMG/M
3300012202\|Ga0137363_10267919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1393	Open in IMG/M
3300012361\|Ga0137360_10610405	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300012683\|Ga0137398_10218674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1261	Open in IMG/M
3300012917\|Ga0137395_10934139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300012923\|Ga0137359_10278243	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300015242\|Ga0137412_10831364	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300016445\|Ga0182038_10590922	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300020199\|Ga0179592_10058803	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300020579\|Ga0210407_10036644	All Organisms → cellular organisms → Bacteria	3649	Open in IMG/M
3300020579\|Ga0210407_10474291	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300020580\|Ga0210403_10369002	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300020581\|Ga0210399_10007981	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8265	Open in IMG/M
3300020581\|Ga0210399_10429941	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300020581\|Ga0210399_10441250	Not Available	1084	Open in IMG/M
3300020581\|Ga0210399_11356431	Not Available	557	Open in IMG/M
3300020582\|Ga0210395_10117384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1974	Open in IMG/M
3300020582\|Ga0210395_10503452	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300020583\|Ga0210401_10009975	All Organisms → cellular organisms → Bacteria	9320	Open in IMG/M
3300021168\|Ga0210406_10328666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300021171\|Ga0210405_10009101	All Organisms → cellular organisms → Bacteria	8534	Open in IMG/M
3300021171\|Ga0210405_10097092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2324	Open in IMG/M
3300021171\|Ga0210405_10113608	All Organisms → cellular organisms → Bacteria	2138	Open in IMG/M
3300021178\|Ga0210408_10893400	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300021181\|Ga0210388_10992371	Not Available	720	Open in IMG/M
3300021315\|Ga0179958_1271530	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300021402\|Ga0210385_11185424	Not Available	586	Open in IMG/M
3300021404\|Ga0210389_10301423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1256	Open in IMG/M
3300021405\|Ga0210387_10405017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1209	Open in IMG/M
3300021406\|Ga0210386_10240556	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300021406\|Ga0210386_10538331	Not Available	1009	Open in IMG/M
3300021407\|Ga0210383_10185746	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300021407\|Ga0210383_10285868	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1417	Open in IMG/M
3300021420\|Ga0210394_10009722	All Organisms → cellular organisms → Bacteria	9641	Open in IMG/M
3300021420\|Ga0210394_10128777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2194	Open in IMG/M
3300021433\|Ga0210391_10993638	Not Available	653	Open in IMG/M
3300021433\|Ga0210391_11519928	Not Available	513	Open in IMG/M
3300021475\|Ga0210392_10155002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1568	Open in IMG/M
3300021478\|Ga0210402_10316272	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300021560\|Ga0126371_10001260	All Organisms → cellular organisms → Bacteria → Acidobacteria	21338	Open in IMG/M
3300022504\|Ga0242642_1010792	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300022528\|Ga0242669_1025351	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300022529\|Ga0242668_1031227	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300022530\|Ga0242658_1019958	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300022532\|Ga0242655_10237607	Not Available	572	Open in IMG/M
3300022532\|Ga0242655_10266532	Not Available	547	Open in IMG/M
3300022533\|Ga0242662_10120013	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300022557\|Ga0212123_10000145	All Organisms → cellular organisms → Bacteria → Acidobacteria	240753	Open in IMG/M
3300022717\|Ga0242661_1107811	Not Available	589	Open in IMG/M
3300022722\|Ga0242657_1027097	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300025905\|Ga0207685_10145270	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300025928\|Ga0207700_10110307	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300027071\|Ga0209214_1002060	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300027071\|Ga0209214_1056297	Not Available	534	Open in IMG/M
3300027109\|Ga0208603_1027924	Not Available	891	Open in IMG/M
3300027266\|Ga0209215_1006327	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300027371\|Ga0209418_1004808	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300027576\|Ga0209003_1005960	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300027605\|Ga0209329_1041715	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300027605\|Ga0209329_1051475	Not Available	878	Open in IMG/M
3300027619\|Ga0209330_1154469	Not Available	516	Open in IMG/M
3300027635\|Ga0209625_1000018	All Organisms → cellular organisms → Bacteria → Acidobacteria	30505	Open in IMG/M
3300027867\|Ga0209167_10236544	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300027869\|Ga0209579_10018481	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3985	Open in IMG/M
3300027884\|Ga0209275_10300770	Not Available	890	Open in IMG/M
3300028047\|Ga0209526_10542446	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300028906\|Ga0308309_10006728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6998	Open in IMG/M
3300028906\|Ga0308309_10818466	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300029636\|Ga0222749_10285591	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300030730\|Ga0307482_1017130	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300030937\|Ga0138302_1661591	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031128\|Ga0170823_12298192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300031128\|Ga0170823_16320604	Not Available	522	Open in IMG/M
3300031446\|Ga0170820_11832360	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300031469\|Ga0170819_10425333	Not Available	830	Open in IMG/M
3300031474\|Ga0170818_108862482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300031715\|Ga0307476_10007834	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6547	Open in IMG/M
3300031720\|Ga0307469_10623735	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300031736\|Ga0318501_10778585	Not Available	529	Open in IMG/M
3300031753\|Ga0307477_10023993	All Organisms → cellular organisms → Bacteria → Acidobacteria	4166	Open in IMG/M
3300031753\|Ga0307477_10451093	Not Available	877	Open in IMG/M
3300031754\|Ga0307475_10062481	All Organisms → cellular organisms → Bacteria	2831	Open in IMG/M
3300031946\|Ga0310910_10024007	All Organisms → cellular organisms → Bacteria	4058	Open in IMG/M
3300031962\|Ga0307479_10088339	All Organisms → cellular organisms → Eukaryota	3003	Open in IMG/M
3300032174\|Ga0307470_10248976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1172	Open in IMG/M
3300032205\|Ga0307472_100017350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3836	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.27%
Aquatic	Environmental → Aquatic	1.82%
Fungi	Host-Associated → Fungi	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.27%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Mycelium	Host-Associated → Fungi → Mycelium	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.27%
Loam	Environmental → Terrestrial → Soil → Loam	30.00%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.55%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12633J13313_1024381	3300001098	Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE*
JGI12673J13574_10016822	3300001167	Forest Soil	MNRSTMSGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQP*
JGI12627J18819_100320783	3300001867	Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA*
JGI12627J18819_101546111	3300001867	Forest Soil	AHQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVDVTAQESPDSQAE*
JGIcombinedJ26739_1002526072	3300002245	Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQP*
Ga0070709_100224293	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHATRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPGSQAE*
Ga0070714_1005219002	3300005435	Agricultural Soil	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHATRVQRSDGALRAEQSFPLASLLAGFFFMSGVGLVAVSAHPVVLPRQENPDSQPE*
Ga0070713_1001383452	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHATRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE*
Ga0070697_1000522362	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNRSTISGLILAVIGIILFAHQDIARIMKKRTVVHAAAVRRNEPAQTAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDS*
Ga0070731_100672723	3300005538	Surface Soil	ERKVNMKRSAIPGLLLAVIGIVIFAHQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVDVTAQESPDSQAE*
Ga0070731_100898522	3300005538	Surface Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE*
Ga0070731_109795371	3300005538	Surface Soil	MKRSAIPGLLLALVGIALFARQDIARIMHKRTAPHSSSVRKSEATLRAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE*
Ga0070733_101599722	3300005541	Surface Soil	MKRSAIPGLLLAVIGIVIFAHQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVDVTAQESPDSQAE*
Ga0070732_100093443	3300005542	Surface Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQRRTAPHSASVRKSEANLKAEAFPLASLLAGFFFMSGVGLVAVSVHPIALSQMENPNGQEE*
Ga0070732_100516233	3300005542	Surface Soil	MKRSAIPGLLLVVIGIVIFAQQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVVPAQENPDSHAE*
Ga0070762_100096355	3300005602	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE*
Ga0070762_100380613	3300005602	Soil	MKRSAIPGLLLALVGIALFARQDIARIMHKRTAPHSASVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPNGQEE*
Ga0070766_100212944	3300005921	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPGQETPDSQAE*
Ga0070717_101680203	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARAMQKRTDLHTTRVQRSDGALRAEQSFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE*
Ga0070712_1003742612	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARAMQKRTDLHTTRVQRSDGALRAEQSFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPGSQAE*
Ga0070765_1003289493	3300006176	Soil	MKRSAMPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE*
Ga0073928_1000068315	3300006893	Iron-Sulfur Acid Spring	MNRSTISGLILAVIGIILFAHQDIARLMKKRTVVHAASIRRVEAAQTAEQAFPLASLLAGFLFMSGVGLVAVGAHPIVLPRQENPDSQA*
Ga0150983_106464231	3300011120	Forest Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE*
Ga0150983_137662142	3300011120	Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMHKRAELHATRIRRPEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE*
Ga0153922_10010995	3300012181	Attine Ant Fungus Gardens	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHTANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVLPRQENPDSQA*
Ga0137363_102679193	3300012202	Vadose Zone Soil	GLLLALIGIVLFAHQDIARVMKKRTESHATRVQRNEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQQQEDSQAE*
Ga0137360_106104052	3300012361	Vadose Zone Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRTELHGTRVQRKEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQPQEDSQAE*
Ga0137398_102186743	3300012683	Vadose Zone Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRTELHATRVQRNEAALKAEQAFPLASLLAGFFFMSGIGLVAVSAHPVVMQPQEDSQAE*
Ga0137395_109341391	3300012917	Vadose Zone Soil	DKEERERNLNMKRSAIPGLLLALIGIVLFAHQDIARVMQKRTELHATRVQRNQAALEAEQACPLASLLAGFFFMSGIGLVAVSAHPVVMQPQEDSQAE*
Ga0137359_102782433	3300012923	Vadose Zone Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRRNPDSQA*
Ga0137412_108313642	3300015242	Vadose Zone Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRTELHATRVQRNEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQPQE
Ga0182038_105909222	3300016445	Soil	VKRSAIPGLLLALIGIVLFAHQNITRIVQKRTELHMASVRKNEAALKAEAFPLASLLGGVFFMSGVGLVAV
Ga0179592_100588033	3300020199	Vadose Zone Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMKKRTESHATRVQRNEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQPQEDSQAE
Ga0210407_100366442	3300020579	Soil	MKRSAIPALLLALIGIVLFAHQDIARVMQKRAELHATRIRRNEAALKTEQAFPLASLLAGFFFMSGVGLVAVSAHPVALPVQESPDSQAE
Ga0210407_104742912	3300020579	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSSSVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0210403_103690022	3300020580	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQEE
Ga0210399_100079813	3300020581	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRNEAALKTEQAFPLASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE
Ga0210399_104299412	3300020581	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPNGQEE
Ga0210399_104412503	3300020581	Soil	MKRSAIPGLLLALVGIALFAPQDMARIMHKRTAPHSSSVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0210399_113564311	3300020581	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRNEAALKTEQAFPLASLLAGFFFMSGVGLVAVSAHPVALPVQESPDSQAE
Ga0210395_101173843	3300020582	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0210395_105034522	3300020582	Soil	MKRSVIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSDAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Ga0210401_100099757	3300020583	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE
Ga0210406_103286663	3300021168	Soil	MKRSAIPGLLLALVGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0210405_100091013	3300021171	Soil	MKRSAIPGLLLALLGIVLFARQDIARVMRKRTDLHATRVQRNDGALRAEQSFPLASLLAGFFFMSGVGLVAVSAHPVVLPRQENPDSQAE
Ga0210405_100970924	3300021171	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPITLSQMKNPDGQEE
Ga0210405_101136082	3300021171	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0210408_108934002	3300021178	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQ
Ga0210388_109923712	3300021181	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSPAE
Ga0179958_12715301	3300021315	Vadose Zone Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRTELHATRVQRNEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPMVMQPLEDSQAE
Ga0210385_111854242	3300021402	Soil	MKRSAIPGLLLALVGIALFARQDIARIMHKRTAPHSSSVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAQPIALSQMKNPDGQEE
Ga0210389_103014231	3300021404	Soil	LLALIGIVLFAHQDIARVMQKRAELHVTRIRRSDAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Ga0210387_104050171	3300021405	Soil	MKRSAIPGLLLALVGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIVLSQMENPNGQEE
Ga0210386_102405562	3300021406	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0210386_105383313	3300021406	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHVTRIRRSDAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Ga0210383_101857463	3300021407	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIVLSQMENPNGQEE
Ga0210383_102858683	3300021407	Soil	KRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRNEAALKTEQAFPLASLLAGFFFMSGVGLVAVSAHPVALPVQESPDSQAE
Ga0210394_100097226	3300021420	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEANLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPNGQEE
Ga0210394_101287771	3300021420	Soil	LLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0210391_109936381	3300021433	Soil	VNMKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0210391_115199281	3300021433	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQEE
Ga0210392_101550021	3300021475	Soil	RDKKKRERNVNMKRSAIPALLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Ga0210402_103162722	3300021478	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDSQAE
Ga0126371_1000126012	3300021560	Tropical Forest Soil	VKRSAIPGLLLALIGSVLFAHQNITRIVQKRTELHMASVRKNEAALKAEAFPLASLLGGVFFMSGVGLVAVSAHPTPGSERDVPDFD
Ga0242642_10107922	3300022504	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDGQEE
Ga0242669_10253512	3300022528	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMKNPDDQEE
Ga0242668_10312272	3300022529	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIVLSQMENPNGQEE
Ga0242658_10199582	3300022530	Soil	MKRSAIPGLLLALIGIVLFASQDIARIMHKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQEE
Ga0242655_102376072	3300022532	Soil	MKRSVIPGLLLALIGIVLFAHQDIARVMQKRAELHVTRIRRSDAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE
Ga0242655_102665322	3300022532	Soil	VLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0242662_101200132	3300022533	Soil	MKRSAIPGLLLALIGILLFAHQDIARVMQKRAELHATRIRRSEAALKAEHAFPFASLLAGFFFMSGVGLVAVSAHPVALPVQESPDSQAE
Ga0212123_1000014595	3300022557	Iron-Sulfur Acid Spring	MNRSTISGLILAVIGIILFAHQDIARLMKKRTVVHAASIRRVEAAQTAEQAFPLASLLAGFLFMSGVGLVAVGAHPIVLPRQENPDSQA
Ga0242661_11078112	3300022717	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRPEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0242657_10270972	3300022722	Soil	MKRSAIPGLLLALVGIVLFARQDIARIMQKRTAPHSASVRKSEATLKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQEE
Ga0207685_101452702	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARVMRKRTDLHATRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPGSQAE
Ga0207700_101103072	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHATRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE
Ga0209214_10020602	3300027071	Forest Soil	MKRSAIPGLLLALLGIVLFARQDITRVMQKRTDLHATRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE
Ga0209214_10562972	3300027071	Forest Soil	MRKGPVYMNRSTISGLILAVIGIILFAHQDIARIMKKRTVVHAAAVRRNEPAQTAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA
Ga0208603_10279242	3300027109	Forest Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQGE
Ga0209215_10063272	3300027266	Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDS
Ga0209418_10048082	3300027371	Forest Soil	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHTTRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE
Ga0209003_10059603	3300027576	Forest Soil	MKRSAIPGLLLAVIGIVIFAHQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVPPQQENPDSQAE
Ga0209329_10417152	3300027605	Forest Soil	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHTTRVQRSDGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE
Ga0209329_10514752	3300027605	Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVIHAANVRRNDPAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA
Ga0209330_11544692	3300027619	Forest Soil	NMKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQETPDSQAE
Ga0209625_100001819	3300027635	Forest Soil	MNRSTMSGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQP
Ga0209167_102365442	3300027867	Surface Soil	MKRSAIPGLLLAVIGIVIFAHQDIVRFMQNKTEMPATRVRRSEATLKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVDVTAQESPDSQAE
Ga0209579_100184813	3300027869	Surface Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0209275_103007703	3300027884	Soil	LALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPNGQEE
Ga0209526_105424462	3300028047	Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAV
Ga0308309_100067283	3300028906	Soil	MKRSAMPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0308309_108184661	3300028906	Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSASVRKSEATLKKAEAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPNGQEE
Ga0222749_102855911	3300029636	Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESP
Ga0307482_10171302	3300030730	Hardwood Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHTANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVLPRQENPDSQA
Ga0138302_16615912	3300030937	Soil	MKRSVIPGLLLALIGIVLFAHQDIARVMQKRAELHATRIRRSEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVVLPAQESPDS
Ga0170823_122981922	3300031128	Forest Soil	SAIPGLLLALIGIVLFAHQDIARVMHKRTELHATRVQRNEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQPQEDSQAE
Ga0170823_163206042	3300031128	Forest Soil	MKRSAIPGLLLALLGIVLFARQDIARVMQKRTDLHATRVQRSEGALRAEQAFPLASLLAGFFFMSGVGLVAVSA
Ga0170820_118323603	3300031446	Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIAQVMHKRTELHATRVQRNEAALKAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVMQPQEDSQAE
Ga0170819_104253332	3300031469	Forest Soil	LLGIILFARQDIARVMQKRTDLHATRVQRSEGALRAEQAFPLASLLAGFFFMSGVGLLAVSAHPVVLPQQENPDSQAE
Ga0170818_1088624821	3300031474	Forest Soil	RERNINMKRSAIPGLLLALLGIILFARQDIARVMQKRTDLHATRVQRSEGALRAEQAFPLASLLAGFFFMSGVGLVAVSAHPVVLPQQENPDSQAE
Ga0307476_100078346	3300031715	Hardwood Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIARVMQKRAELHATRFRRTEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHPVALPAQESPDSQAE
Ga0307469_106237352	3300031720	Hardwood Forest Soil	MNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA
Ga0318501_107785852	3300031736	Soil	VKRSAIPGLLLALIGIVLFAHQNITRIVQKRTELHMASVRKNEAALKAEAFPLASLLGGVFFMSGVGLVAVSAHPTPGSERDVPDFD
Ga0307477_100239935	3300031753	Hardwood Forest Soil	MKRSAIPGLLLALIGIVLFARQDIARIMHKRTAPHSTSVRKSEATLKADAFPLASLLAGFFFMSGVGLVAVSAHPIALSQMENPDGQEE
Ga0307477_104510932	3300031753	Hardwood Forest Soil	LLRDTEDAKGPVYMNRSTISGLILAVIGIILFAHQDIARVMQKRTVVHTANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVLPRQENPDSQA
Ga0307475_100624813	3300031754	Hardwood Forest Soil	MNRSTISGLILAVIGIILFAHQDIARIMKKRTVVHAAAVRRNEPAQTEEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA
Ga0310910_100240075	3300031946	Soil	VKRSAIPGLLLALIGIVLFAHQNITRIVQKRTELHMASVRKNEAALKAEAFPLASLLGGVFFMSGVGLVAVSAHPTPGSERDVPD
Ga0307479_100883391	3300031962	Hardwood Forest Soil	GLILAVIGIILFAHQDIARVMQKRTVVHAANVRRNDAAQKAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDSQA
Ga0307470_102489761	3300032174	Hardwood Forest Soil	STISGLILAVIGIILFAHQDIARIMKKRTVVHAAAVRRNEPAQTAEQAFPLASLLAGFLFMSGIGLVAVSAHPIVPPPRQENPDS
Ga0307472_1000173505	3300032205	Hardwood Forest Soil	MKRSAIPGLLLALIGIVLFAHQDIARAMQKRAELHATRIRRNEAALKAEQAFPFASLLAGFFFMSGVGLVAVSAHSVVLPAQESPDSQAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087568

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences