Scaffold Ga0212123_10000135

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000135
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 245814
• Total Scaffold Genes: 238
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (68.49%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F003810	Metagenome / Metatranscriptome	467	Y
F004287	Metagenome / Metatranscriptome	445	Y
F008315	Metagenome / Metatranscriptome	335	Y
F056453	Metagenome	137	Y
F089477	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000013518	F001450	N/A	VPSKSRNSAPPRIRVTRETHDTPAAITERITRAGGTNRYGEPNFRVVWGGARLTWIGGRWTDRDAHGNTTREAIELRRVPKYLPVDRWHIERWMPPEFYGSPDQWRALTAETEDGIRIPAIGPYPARGDYEHCFTLQSAAGEFEPLSAAACDWIVRAIEWSHRQPRSDQRAALAQREARREREAEAAADAALDMAFTP
Ga0212123_10000135182	F089477	N/A	MDLTPKQAALLQRILSLGFEFASFPVYPNHIGIRRGNCAALLSPVAPDTFRVFAEPAYLVDGNLSARITLDGHDYYIWKKQKLEATAARQAELASFAADLAEAILPIA
Ga0212123_1000013520	F004287	AGGA	VTTTASIHPANAGPAPAARDFAADARRPRDILVETRSNGDASATASIASISDQDWHISRTHGVYHIPACAKGEPYALVVITSRGDALDLGDNRRFPFTISARDIAEDLLQDLREHGIFVCAGERPTADELASATTRRDAYYHQLVADGDTMWARGHSFREISDLHRRAAIALGVEREWAYVPTRFADCPACGEKVKPSVAVCKHCGAILDAEKAAKHGLGGGTPARVANGRRGSVA
Ga0212123_1000013523	F003810	N/A	MHIPESAHLWTLFAAGHGLHVLKRASLSAQSSLSGTKTRLEWLRTNALSLAIRLFVNAAAFSYWIAHPGAATHFFGSAGLAVNLTLEPGHATAAMFGLSGDSLMDWAAAKIPALQKEIPAVND
Ga0212123_1000013534	F002623	N/A	MHVRAYTPADLDALRRIHARQGFDYAFPDLADPIFISKLVIDDGTDRPVCASLARITCEMYLLADPDAGTPRERYARLLALHEAGRTDLLARGLDDAHAWLPPLIARRFGSRLEALGWIRDDAWTPYCRRLREK
Ga0212123_1000013536	F008315	N/A	LQFVSVPPCLRASVSLWLAMLKLIETNVWPLALTSLVQFVLFLRWIYRRIRNDELMRAFVEDMAMNHLPHMYDLLEKLCDKQGIDRDPAPPIRWIDLSDRNN
Ga0212123_1000013553	F056453	N/A	LGAAIRSLFQTHHATFNSDLALHSQNLETSGDLAYDSGDFLETLTTITTGAKILPKGSYIMIFKRQANGS