Scaffold Ga0212123_10000124

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000124
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 261125
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 164 (67.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000174	Metagenome / Metatranscriptome	1764	Y
F014764	Metagenome	260	Y
F062850	Metagenome / Metatranscriptome	130	Y
F075380	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000124112	F075380	N/A	MRRLLLLVLILGCLAGIAYAQYPAADWPDTDTPPPFEVYALASGMRTVDATPTLVIKNPAPNQSFGFTPSGVASGAQVGFVWRQENIGLVADLGFHKYSDRTGSTSLAPLMLGVRVYSDEHFRTSFFGEGLAGAYRWTESADKANFTTVKGIVAAGGGMDIRLTRRLVFRVFEIQLMIAGARVGPLLTSRASTGFAVRF
Ga0212123_10000124161	F000174	AGG	MKNVYEVLRQKELEMSRLEKEVEALRVAAPLLSDDKDISSDTVAKPTLAPAVASAPQQPIRIPQPAVNQSQPTARAAGWEDSAKRWP
Ga0212123_10000124240	F062850	GGAGG	MNKKEIESPKLTANFLIYIGVFVLLLFAVLAHFVWKLF
Ga0212123_1000012448	F014764	N/A	MTTRTQDCSGETARVHEPTKHPLVVRVTDNDFQCEVLSKLAGLETKMEMLMGGGQPGRMSLIENRVNTLERNDVRRGVYDRLVNAAMTTAISLLITMHDRWWK