Scaffold Ga0212123_10000104

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000104
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 284854
• Total Scaffold Genes: 285
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 213 (74.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000297	Metagenome / Metatranscriptome	1348	Y
F010040	Metagenome / Metatranscriptome	309	Y
F033889	Metagenome / Metatranscriptome	176	Y
F035442	Metagenome / Metatranscriptome	172	Y
F045963	Metagenome / Metatranscriptome	152	Y
F063904	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000104131	F035442	GGAGG	MMSIFEKLQTAYIASQETYREYARNSLLAAQQLAHEFREYIGAPETYTDPEDETRRPYVRLLSFQMPDGVPVAVPPDAQADLLTREPDGFWRFAMALTLDRDVESFPKQQLAFFMRLKVHAGICHVQMLDSGFQDFRIAPPSETDKRALFDHMIEMVNRVLSAKPWEGIEKLPIGFELHHPDLPLEVPEQPLAQP
Ga0212123_10000104162	F000297	N/A	MSYETFRVEVTRDETRADGAVNIEITAYLDRMPETDMPTRGMLTRAARGVWNSRLQFTGDFATLDEALTAIDAAYPDADHLRCYEYTVDDEFAREVAPLVKSGGKWRPSPRRTP
Ga0212123_100001042	F010040	GGA	MIARMFLGAVLASAALAACTPFIPVKDDFGTSAAVPAGNIPPEFAEFNAYDPAINPLLADQMCATPYQPLDDKIMAAEPGRIVAERGRCATHIPFWGNGR
Ga0212123_10000104200	F033889	GGAGG	MSLLGVTTAVILAASSGATSLSTTSTTDAGRIAANAGFLLGNAHRCGIATDRVVKAGQLIRELIKAASKDDKEQEDATDQFATFFLLTALPEQGDGKLVASCNSVTSEFQKFERHRIAGGAANPSSNKAVGNTPRPAFRLGDGE
Ga0212123_10000104229	F063904	GGGGG	MDEKLIRMLIQYKDEFDRAPDNLSVGACGALLDLYMHRLAGWGFDEPATMGVLSAIFGIRESAGQPATLKQLHMTAALTRRTERAKPQVPAAA
Ga0212123_1000010494	F045963	GAG	VSRRAWAVALCLYAAAAAIDFAVHLWADSQSGQDWRDPANLAVSFSAGLFWPADLIASLL