Scaffold Ga0212088_10025778

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10025778
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7481
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F016247	Metagenome	248	Y
F016499	Metagenome / Metatranscriptome	246	Y
F058718	Metagenome	134	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1002577813	F016247	AGGA	MTHFIVEHRYRGGYVMETICGVEDIDTSMYKDLLGVWVCDSQEELQIMEKQLKELRHARSSQPS
Ga0212088_100257784	F058718	AGGA	MQVICYNTEFDVPDLLIDQFMKDFDGLPGGKHREGVMQIRGSIEEILDIVADDPELLYEPEYQTDFIRALAMKQALGELGILYDS
Ga0212088_100257785	F012096	AGGA	MSTWLIAAMGAVYFYIACEQFWKGSMGTGIMFLGYAIGNIGLVMVAK
Ga0212088_100257787	F016499	N/A	MFTEEMAKTVLELGKKGASQKTMYAAINISKATAAKWKKEDPDFAEILDLATTYGQAFWEMMLLANIDNKAFNSRVAEVALKGQYPDDYSQRMDIKQDIKKEVVVDFNGEIAALIKALKE
Ga0212088_100257788	F083731	AGGAGG	VNLKQLLKHAGISNNIIKEVERKAERTNAQKEQEHQEKALAMTKMMLNDALRYRREHGDKTPPSAPKKTIIMPGDF