Scaffold Ga0212088_10013015

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10013015
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12545
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029327	Metagenome	188	Y
F037029	Metagenome	168	Y
F056283	Metagenome / Metatranscriptome	137	Y
F074332	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_100130152	F037029	GGA	MKHSFRIWCQEKWFEHKDELEAYQQPLPYTAREYFNRYKFWLKREYKHQQHLSK
Ga0212088_100130155	F029327	GGAGG	MGFYKNIEIEIMEWQARGRSVEDTYIYFKDYVTHEDVVRIFARDCDEAAV
Ga0212088_100130156	F074332	AGGAG	MTQNHLAQYNVEELQGYFSDFHKDFYGFRPRTLGSDEDWRNRSWLEAQINRIHDTMDAMKKTYSGREELRIAGWIIDEADFNDIIDPEEYARWSADADAVAYGEAQ
Ga0212088_100130157	F056283	AGGAG	MFETVIDQLVKVTLTNQPVKTEFYNGTLFVHKITERQARRVFHRLSETLGLGSVQVSPIGNTGEYAFDFVANKQQEDFSPFATVNS