Scaffold Ga0212127_10006458

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212127_10006458

Scaffold Ga0212127_10006458

Overview

Basic Information
Taxon OID	3300022550 Open in IMG/M
Scaffold ID	Ga0212127_10006458 Open in IMG/M
Source Dataset Name	Zodletone_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3082
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Oklahoma, Zodletone Spring
Coordinates	Lat. (^o)	34.9956	Long. (^o)	-98.6889	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074887	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212127_100064583	F074887	GGTGG	MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR

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