Basic Information | |
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Taxon OID | 3300022543 Open in IMG/M |
Scaffold ID | Ga0212119_1000956 Open in IMG/M |
Source Dataset Name | Indian_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10573 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indian Creek, Illinois | |||||||
Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025467 | Metagenome | 201 | Y |
F076922 | Metagenome | 117 | Y |
F104982 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212119_10009561 | F104982 | GAGG | MALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMS |
Ga0212119_100095610 | F076922 | N/A | MDTTAVETGAPDFGVFGQLGDYGPIGLAVLALGYVAWIFIKRYLAEKDRLKEELLADKKKKRTSKSK |
Ga0212119_100095612 | F025467 | AGG | MSVFKKENISIILTLCLGVMCFILLMREPKQVYPVSTQKTIEKRIQGKETIIKEKGKIIDNSKLIISELNNGLFDLQSQLDAVKNARDTFNIVQIQDTMIHTLYRRDKEKDLIIASQDTIIQAQRYIINSKDTIITTLQFDLKKVKRQRNWSLLLNGILTGGLILK |
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