Scaffold Ga0212119_1000956

Overview

Basic Information

• Taxon OID: 3300022543
• Scaffold ID: Ga0212119_1000956
• Source Dataset Name: Indian_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10573
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025467	Metagenome	201	Y
F076922	Metagenome	117	Y
F104982	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212119_10009561	F104982	GAGG	MALVNQVQKRVRMPKWDIVKFQILTHCYINRVTMS
Ga0212119_100095610	F076922	N/A	MDTTAVETGAPDFGVFGQLGDYGPIGLAVLALGYVAWIFIKRYLAEKDRLKEELLADKKKKRTSKSK
Ga0212119_100095612	F025467	AGG	MSVFKKENISIILTLCLGVMCFILLMREPKQVYPVSTQKTIEKRIQGKETIIKEKGKIIDNSKLIISELNNGLFDLQSQLDAVKNARDTFNIVQIQDTMIHTLYRRDKEKDLIIASQDTIIQAQRYIINSKDTIITTLQFDLKKVKRQRNWSLLLNGILTGGLILK