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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022543 Open in IMG/M |
| Scaffold ID | Ga0212119_1000272 Open in IMG/M |
| Source Dataset Name | Indian_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21715 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (22.86%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indian Creek, Illinois | |||||||
| Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001775 | Metagenome / Metatranscriptome | 636 | Y |
| F014605 | Metagenome / Metatranscriptome | 261 | N |
| F039629 | Metagenome / Metatranscriptome | 163 | N |
| F068589 | Metagenome | 124 | Y |
| F069672 | Metagenome | 123 | Y |
| F085401 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212119_100027212 | F039629 | N/A | MIEALDEITEIPFEVFWAKFMELYPGIYDQFTTEVYWVKMKEANRILAFEYLCKFGSDYKEPWKHLHHFDLPW |
| Ga0212119_10002722 | F085401 | N/A | MMSAQEYGVLKGYSEKSTRVHQIIRSGKFPSEWVQAPKKIGNQWIVFVDPNWIRDGRG |
| Ga0212119_100027220 | F001775 | N/A | MEDKEKIRIATLSFMIGVVLTFVIFPRPESEVVYRYSTRVETDTIYSREIDTVYVPKNKIKTQVLRDTVLIDFKPQISLFESTFPFEYGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETRTIIQKPKGIYLGGVVSSKMELGAKVAYLDNKYLFEYQYQPLQKVHQIGVSKKLF |
| Ga0212119_100027226 | F069672 | N/A | MRLIFILFAFISLECNAQYYVMVAPNVAFDTKLQDTKNLLGGTIEVGKYFGDTAIGINSGWWTFDKKDFYQEIMATFPIYDRFSVSAAIGYFYSHKDITMEYDFNYTIPMELGYSFVLSYGAQSAFGDTFGAYSIGINKDFKIK |
| Ga0212119_100027230 | F014605 | N/A | MKVNLAVAVTDIEGNKIPNEKGEEMHLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKEKIKAKGFTVLILAPLYEALSEK |
| Ga0212119_100027231 | F068589 | N/A | MKQIEPVSIWDNGTVQEAKILNAYAINVTLGTSATFYYQLFAESIDLAVGTQLAQGNLTMTGEAYAQWEMDDYAWDWVAHQLNLTITGDYVPHVPPQPETQEISQDTIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |