Scaffold Ga0224452_1012650

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1012650
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2239
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007604	Metagenome	348	Y
F105848	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_10126504	F007604	AGGA	MMPTDPTRRSALSVALLAHANTGYEVDCWMADNGQPHGSVRYDTDRAWFTIQGRPTALRELAEALVRCAELTEQTYPAPAAAVVEGVAG
Ga0224452_10126505	F105848	N/A	LIALKVPGVPSQAIRQGAPVKVVGLVAQPWTMNERSGVSFRAASVEPAIVQAKAN