Scaffold Ga0224452_1000162

Overview

Basic Information

• Taxon OID: 3300022534
• Scaffold ID: Ga0224452_1000162
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13270
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002588	Metagenome / Metatranscriptome	546	Y
F062592	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224452_100016211	F062592	AGG	MANEKFSDLAHRIRRFQDDLAKQTKELAELRSELARLKQIMGTVREALQCIDTYSYKGGMTSDAEKKAHAQLAEFMNKDF
Ga0224452_100016213	F002588	N/A	VSLIVGATLAVLIWFFPRWFHDHTSDRMNAFVLGMVPLLAGASVFLVRWFVSPYPIYMQVRRKVDALTDTKKEERAKAVQGCFERSAAILKQHHSVLLSFHALSRAEGHRLESNEEVSEVCDLIQEAGYDHPFEGISPGYVPEKDWLPFLKYVKHAPNINPEEGKDYLDAADRWRQDHEYPLPPEDADFALLVEKTLLR