Scaffold Ga0181351_1178583

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1178583
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 733
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001150	Metagenome	764	N
F016261	Metagenome / Metatranscriptome	248	N
F029717	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_11785831	F029717	N/A	MAIVVSGFNLDNYVDVPTRLGMALKKYPDLRIQETHREIIEMP
Ga0181351_11785832	F001150	GAG	VTQKSADLRGGRTVLTKHERHRMRVAMVESQASANAKWTPQQQMQVDTAIRKMARMLPRFTADQVWYELGASFPVTKGMTARLLVAQRNGVIKNTGEITFAERGGEHDHAQRLTIWQSL
Ga0181351_11785833	F016261	N/A	ENIDPRTDPQFQALKHVMEQITQNKVPIRQPWELAARSTLRAIQHEIDDRNVLDDAELIDVLNQTRIEIKYLLSIITDLDERVKERDAEVSRLERWAHRAN