Scaffold Ga0181351_1029713

Overview

Basic Information

• Taxon OID: 3300022407
• Scaffold ID: Ga0181351_1029713
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015987	Metagenome / Metatranscriptome	250	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_10297131	F015987	N/A	MTQITQTKLNKLNVFELYKHYAALEQSLPLLTPESQDLAKSELETCADLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLG
Ga0181351_10297132	F013517	N/A	MFESLFAAVIPVMKDLLWAAAGMLLTYLINKVQSQFN
Ga0181351_10297133	F002738	N/A	MSIDTYGLPSDQYVKFFKDNIRFAARLYLDTCNILSAEGVGNVDFKTVSDMYQEAVYATNDACRRYQKTNNPDALKENDPYAILTPSREELMVEIQAVNAKVETLTNYVTELVKVTTKGLENLVD
Ga0181351_10297134	F043890	GGA	MQNTSSLAMSKMNSIKKLKIDFIEETDGSATIHIKWDETDPDLQWWTDLGEEGQKSFMIKALANVCNSHVD
Ga0181351_10297136	F002333	N/A	MTIQTQLELNAAQSCIYTRTNIRRAYQDFDDTEIAGIYVRADDCIVVRRDGSEQTYSRELIKAAYGTYTHRLKDFFSYLGPNYRGPSVWHHNAYILFKGWYYSHALGHLTSNAKLQYHWADKFIHVSDPAKVTALLQSDQTDLGHLVAPDGLRLPNRAINLDSELDDNEEQQPVFGEPTCSCGSFQRQLNNLSAFQEEIQGFRPWCIHLTWFNKYRELLCKRTEVRNISASGTPDKCVAWWYAPPSDAHSDGRFMLLHTKSGAQAPMTHWRHYKPKEVFTQKDAWDLFFNMMDAGYVPFPGTSLPQLKSLLKNK