Scaffold Ga0224507_10006293

Overview

Basic Information

• Taxon OID: 3300022307
• Scaffold ID: Ga0224507_10006293
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4609
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.03
  • Long. (^o): -122.37
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036312	Metagenome	170	Y
F042344	Metagenome	158	Y
F076108	Metagenome	118	N
F079336	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224507_100062932	F079336	N/A	METILRTELETADKRIIVLESTIETYKRIVAGLDERIELMEKSHKFELENYYTKNKTNES
Ga0224507_100062934	F036312	N/A	MKRKLTHSLCEMQKVHKDLYEVFTTDYWDNGTHTIKDISHHSTREEAIEQKLINKHKNLN
Ga0224507_100062936	F076108	N/A	MTRIELSDEEIEYTTYFPIPDPHDIMYSFEEMVRMYTQADIEVDNYIIERAKEIHLKNSN
Ga0224507_100062939	F042344	N/A	MKRLFKDGIVTTLMGLTILSIAVCLYISKSHTETEAGAVAALGVLLLRAKDSLIGLTKK