Scaffold Ga0187827_10075292

Overview

Basic Information

• Taxon OID: 3300022227
• Scaffold ID: Ga0187827_10075292
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2587
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates
  • Lat. (^o): 18.2
  • Long. (^o): -104.2
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187827_100752923	F097503	GAGG	MDCDTFDGVVEMFEQRMIEGCIANEFKCTYTKETGEFVAEINGKFYVAMIREKK
Ga0187827_100752924	F060975	AGGAG	MGKTIRRNPVAKNSEKFNKPKTIRDKKKDFYRPDSKREFEEAIEDMGFDEYNRKEAIIIQYQDDLARSQEDGWPYED
Ga0187827_100752925	F049037	GGAG	MTESPCDTCHNYWLCMEGSRACPDFKLFYDTGKITHHDRSPNWYIDLPPYTITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKARESTTRSQNHLGRVVQREMGRNAARVCSEENPGEN
Ga0187827_100752926	F049924	GAG	MRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRIKAVETVMKSRALRNKYLGEDWYSMPLSKVVKGLTYRFNQDLPLEFADRMSVYCR