NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187833_10352607

Scaffold Ga0187833_10352607


Overview

Basic Information
Taxon OID3300022225 Open in IMG/M
Scaffold IDGa0187833_10352607 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)799
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)20.3333Long. (o)-107.0Alt. (m)Depth (m)400
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091872Metagenome107N
F093713Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0187833_103526072F093713GGAGGMRDILVRAGKTWLQTFVGLLVASWASRTINIETLDPLQELSTIAGFAFASIPAAVSVLQNSLKLAKPGA
Ga0187833_103526073F091872N/AVPELVASIGIIAAATISAISAVLVARLRLDYRNQNGTQAVQVDLLREINRRTTRIEDRVNDHAERIATIEGRQDSRPCEK

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