Scaffold Ga0224499_10172264

Overview

Basic Information

• Taxon OID: 3300022206
• Scaffold ID: Ga0224499_10172264
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 738
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N
F086834	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224499_101722641	F086834	N/A	MVMCEWTLADIKNRASNKAFAKVTILGLDIEEQRRNLKNGNIGGVTYEEA
Ga0224499_101722642	F005817	N/A	MRSNLSSRLKPEFKKGLENNKVRYPSMTNDIEFLLTQIFYYDDLTVRQLLNIFVFSDMEYLDRKSFDWRYGEDVFEVENNVA
Ga0224499_101722643	F082713	N/A	MKIKGLTEQDCAFVYYVLRDWSQNHENYDEQDVDKVYQIAKKFKTY