Basic Information | |
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Taxon OID | 3300022201 Open in IMG/M |
Scaffold ID | Ga0224503_10176660 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 690 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.79 | Long. (o) | -122.36 | Alt. (m) | Depth (m) | 17 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005843 | Metagenome / Metatranscriptome | 388 | Y |
F009460 | Metagenome / Metatranscriptome | 317 | N |
F064688 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0224503_101766601 | F005843 | N/A | FMMALALRLNMKVGLKMTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQENNNG |
Ga0224503_101766602 | F009460 | AGGAG | MAKWDLSKLENSASVGAHIDEDSSTPTQPTPQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIISLCDMLERRL |
Ga0224503_101766603 | F064688 | GGAG | MTEHMTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHDELSVGDLCSMIEQDAV |
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