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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022200 Open in IMG/M |
| Scaffold ID | Ga0196901_1043758 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1697 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 38.8455 | Long. (o) | -76.4191 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F013517 | Metagenome / Metatranscriptome | 270 | Y |
| F043890 | Metagenome / Metatranscriptome | 155 | Y |
| F045692 | Metagenome / Metatranscriptome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0196901_10437582 | F043890 | GGA | MQKTSLSAMLKPSSIEKLRIEFIEEDDGSGTIHIEWDEKDPDLQWWTDLGEEGQKSFMIKALTDATKHDVD |
| Ga0196901_10437583 | F002738 | N/A | MSIDTYGLSTEQYQEFFEDNVRFAAELYLRTCNILTTKGVGNVDFKTVLDMYQECTYQTNDDCRRYQKANNPEAVKDDVLFGLSPSRQELLERVESLHAKIEALTDYIGKLTEIVTDGLNGVTDALGTDQTKVD |
| Ga0196901_10437584 | F013517 | N/A | MFESLFAAVLPVMKDLLWAAAGVALTFCLNKLQKVFQ |
| Ga0196901_10437586 | F045692 | N/A | MSETQLTSVKLNKLSIIELYKHYAALQNSMPFLTPQSEEVVKAELETCANLRSEKVDAIHYAMAAHEDALER |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |