Scaffold Ga0196901

Basic Information
Taxon OID	3300022200 Open in IMG/M
Scaffold ID	Ga0196901_1000361 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022200 Open in IMG/M

Scaffold ID

Ga0196901_1000361 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24159
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.92%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24159

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.92%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.8455	Long. (^o)	-76.4191	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.8455

Long. (^o)

-76.4191

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_10003611	F029443	N/A	MTLSNLIEKLKVIQEDHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNMTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNDYNFNTQPQASVEFFQERFDDFTAGVSIEIEVTSPMPLNLCQVPTI
Ga0196901_100036110	F047062	N/A	MHDSENYFDQEITFSYEDRDYLWVGDYTIETYGEEESEYAPAYGEMEVKIDHTYSLMSYEDGIEIKPTESMLMALELEIERNH
Ga0196901_10003612	F049637	N/A	MNPLKSDELGVPSTLLAIFANVTTIAGLQLVNVGLTIVISILSIIFLSYKIKNEKEKNDKHKNGEG
Ga0196901_100036121	F044503	N/A	MRRRNLTEYEKIVIFEMWQDRVPTKVIALTLGVTYSCIYQQLKKRYLVG
Ga0196901_100036123	F008073	N/A	MMKGIILTHLQKMEFVCGLKQFKEYSKDDGIQLLNCLNKLFTSYGWITEERVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYNHHQSQIVQEVQAKNTQHREPTEEEIAQWIEIGKQIFRDNYQHAKESGFCRDLSEWGGNWFNKFQEKGILKPWLYQVDEIEKDVRRELRLTTRYIDEVTVGAKSKNKIWKLFILESIKENKNLDKLI
Ga0196901_10003618	F001775	AGG	MDREQTRIAAIFFLIGAVVAIILFPKRELETVYKTKYDRLTDTLYITSTDTVYIPKTKIKTKVLRDTILLEYKPKISLFETTFPFDYGSTKVSGEVLGEVLKMTATNDYAVPVVTNTITETKTETIIKKSKGIYLGAGVNSLLQPSAKVGYLDNKYLFQYQFQPLEKIHTLSVSKKLF
Ga0196901_10003619	F036704	N/A	MWIEIDVMLAGSTMDWKELGLEVKHEFSKRMVRVKDVAYVQELVHDIQVIFFYDNTSCLIRGTYAEIRDELIHLSQDEEFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196901_1000361

Overview

Ecosystem & Geography

Associated Families

Sequences