Scaffold Ga0196901_1000312

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1000312
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26133
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (68.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F008402	Metagenome / Metatranscriptome	334	Y
F048261	Metagenome / Metatranscriptome	148	Y
F068810	Metagenome / Metatranscriptome	124	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_100031221	F008402	N/A	MEKVVISTQIRIQQYESYWYTAEDTHLDVGCEGFTISYWEVENEMAAFDEEKGEKRVRHICMNEKEALAVADAIYKLFKN
Ga0196901_100031237	F090316	N/A	MPDDLQREEELFFKALEEYKEKKSQEPKDKTTNTLPAVIAAAL
Ga0196901_100031238	F048261	AGGA	MRCEREIMSEPLNHKLDLSKIKTLTDVKNVFECMCLYSNASEEHEKYELHKEYFTIPNDPQELKLELPRKSLEEISQEFDEKIDKLIEDTKRKFYGCKIHTESRYERALDKIFDDFEYAKKHGQFPLKFTLDYSKLTATGSNITSNFVIKSGGEEVGYYTTGNGYLRFLMDKKPTAVVRFFMNKLLGFRWIDT
Ga0196901_100031247	F000919	GGAG	MRFRNIEFRWSKCDNKYELVKWNEDPYGLNGFKPETCYVIAFFDKGKEGYDMRTIGNRFFEDKDAWVVGKYALEFLNAIFMIEQNELNYD
Ga0196901_10003128	F068810	GGAG	MKEYLDGVKKRAGLVILIGQMCIVMYQLSALDQRSIVVCEQRYHQLVCVEQ