Scaffold Ga0196905

Basic Information
Taxon OID	3300022198 Open in IMG/M
Scaffold ID	Ga0196905_1003613 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022198 Open in IMG/M

Scaffold ID

Ga0196905_1003613 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5642
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5642

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100361310	F025982	N/A	MSCHEHAIKDFDLQLEMNSLQLDMLKENGEVIPYHVEEYGDLEEKKLKLLVGKRFHQNASNAYWYYLQREKTAK
Ga0196905_100361311	F001018	N/A	MTQITQTKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACADLRSEKIDRIYYAMAAHEDALERIKKEGELVTQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTEERTAYCVEETITTTKRTVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPNGVKVTQEYAVRSKRIFSEPRVDLAPSEYPAKLLREDPCAD
Ga0196905_100361312	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGMALTYVLNKLQMQFN
Ga0196905_100361313	F002738	N/A	MHSTKLALVMSIDTYGLSSEQYEEFFEDNVRFAAELYLQTCNILTSKGVGSVDFKTVLDMYQEAVYQTNDDCRRYQKVNNPEAIKDVDLLGIYPSREEMMEEIKSVNVKVEALVDYIARLVETTTDGLNGLAEVMDKDA
Ga0196905_100361314	F043890	N/A	MQKTYSLAACNPNSINKLKIEFIDEEDGSATIHIEWDENDPDLQWWTDLGEEGQKSFMIDALYEACACYVD
Ga0196905_100361316	F002333	N/A	TNIRRAFQDFDDSEIAGIYLRDDNCLVVRRDGSEQTYNRELIKVAFTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYTHALGHLTSNAKLQAHWADKFIHVSEQQKLVHLLQSDQTDLGHLVAPDGVRLPNRPIDLNSDMEAEQSEPVVGEPWCSCGSYQRQLSNVSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAVKKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196905_1003613

Overview

Ecosystem & Geography

Associated Families

Sequences