Scaffold Ga0181353_1022232

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1022232
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F021243	Metagenome	219	Y
F068756	Metagenome	124	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10222321	F068756	AGGGGG	MSDFKFGFGLAPIKKEGGIADPDEFTWECDCEACALKYQKWKELFDIQQKELRGET
Ga0181353_10222322	F021243	AGGAG	MKDAEDEAFEQLALKQGQWEHTSGWRKRQIERDFAAIDDANNIRKKQIAHMDVHSHPAEFVHLHRNDTIEEVARELETKFTMPFGRDTVQSFVAYIRGMKR
Ga0181353_10222323	F093280	AGGAG	MNPKIEALIKATGCADVGELFDRSIRLGQVLHQFKQEHGRIMNATELRYLEAVLHAKPQERT
Ga0181353_10222324	F011292	AGGAG	MTPRSFDIDTCKEIVGDARMRVIEAKARQDADNGVMDKPARAEGSYWDGVRSDMEYVVYVTAHHKRLERIQRIKEKT
Ga0181353_10222326	F019438	GGAGG	METILTTIILGGIGFIVCGLVFVGLMHLWFWMDENERGDR