Scaffold Ga0181353_1014362

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1014362
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2042
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F044444	Metagenome / Metatranscriptome	154	Y
F053230	Metagenome	141	Y
F073444	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10143621	F073444	N/A	MNCHQHAIKDFDLQLEMNDLEMNMLKDGSGDVLPYNENRMDELEQKKLKLLLGKRFHQNATHAYWYYLERS
Ga0181353_10143622	F001018	N/A	MAQITHTKLKELNVIQLYEHYGALERSLPLLTPESQDLARAELEACITLRSEKIDRIYYAMAAHEDAVERIKKEKGLILKAQKHHESQVDSLKHLLNYLKRVLPVDANKITGRNYQFTLVKKKDLTVEIKSDPEFWSSEERQHFCVEEEVTTTKRTVLRSMSGEILSERIEPSNKTNVLPNLDAIRSAHQAGQLLPQGVKVFQEYSIRSSRIYGKSSVDLASSEYPRDLLPEDRCADEC
Ga0181353_10143623	F053230	N/A	MFDFILSSITSVVRDLLWTAAAALLAYTLNKLQSHFQNG
Ga0181353_10143626	F044444	N/A	MTDDILEYARQLATQPTVNFMSNYQRYDLEVPEDTHWELVKMAADLRMHHEDYVQNMLIAHVEQHLDNEAAARGD