Basic Information | |
---|---|
Taxon OID | 3300022179 Open in IMG/M |
Scaffold ID | Ga0181353_1007486 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2656 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F057211 | Metagenome / Metatranscriptome | 136 | Y |
F065767 | Metagenome | 127 | N |
F085401 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181353_10074861 | F065767 | GGA | MTSLTQEQKEEIVRLYKLKVMNKNIATILNISKHLVNNYIYKEYLLTNERAKNTCSHMKSADHVLELYKKGVPYKEIMYMTGVKYHHLCEILKLTDQRRVHGLSIKIVRQIERMVAENRRTCEIAKELNLDYNRVSHWVRKAKKEGVH |
Ga0181353_10074866 | F085401 | AGAAG | MLYEMMTATEYGVLRGFTEKSTRVHQIIRSGVWPEEWVYPPKRLGNQWVLFVSTNWIKDGRRSN |
Ga0181353_10074867 | F057211 | N/A | MLKDYHFILEQSGFSLELESFTNEGIVLDLYFGNGKSLTLELYDDLNERFTDHYRVICAILDPFIVEQLEANVRLCFTK |
⦗Top⦘ |