Scaffold Ga0196887_1005027

Overview

Basic Information

• Taxon OID: 3300022178
• Scaffold ID: Ga0196887_1005027
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4782
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F023860	Metagenome / Metatranscriptome	208	N
F072755	Metagenome / Metatranscriptome	121	N
F089160	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0196887_10050271	F072755	N/A	CSKFYSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0196887_100502711	F003677	AGG	MVDESLYFFNKDVGKKVYEIEYEATYVTKWQVLANDENEAFNIWLEGNKQDLVTEDSKDCVCSYVKDYTQIGKTQVIAEIKYNKEDDEVYADET
Ga0196887_100502717	F089160	N/A	ENILWWKKYFLKVIHLPILYPKMGYIQIVKVYRDKKPSIRVVTVPTSSDKRELLVLNKIYGGDNG
Ga0196887_10050278	F023860	AGGAGG	MDRMKEMFELRNAVKNFLENKLEADIQGSGMTVREPFSADISFKIDNTNYVLTIDEV