Metagenome / Metatranscriptome Family F072755

Basic Information
Family ID	F072755
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	51 residues
Representative Sequence	ICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Number of Associated Samples	110
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.13 %
% of genes from short scaffolds (< 2000 bps)	1.65 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.347 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (82.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.083 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.17% β-sheet: 0.00% Coil/Unstructured: 45.83%
Feature Viewer

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Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF06067	DUF932	1.65
PF11753	DUF3310	0.83
PF01381	HTH_3	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.35 %
All Organisms	root	All Organisms	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.35 %
cellular organisms	root	All Organisms → cellular organisms	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002483\|JGI25132J35274_1000403	Not Available	11650	Open in IMG/M
3300006900\|Ga0066376_10012012	Not Available	6442	Open in IMG/M
3300017739\|Ga0181433_1023635	All Organisms → cellular organisms → Bacteria → Proteobacteria	1623	Open in IMG/M
3300020396\|Ga0211687_10074402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1473	Open in IMG/M
3300022178\|Ga0196887_1005027	Not Available	4782	Open in IMG/M
3300023116\|Ga0255751_10029867	Not Available	4014	Open in IMG/M
3300027668\|Ga0209482_1017575	Not Available	3185	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.17%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.83%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	41.32%
Strait	Environmental → Aquatic → Marine → Strait	16.53%
Unclassified	Environmental → Aquatic → Marine → Unclassified	15.70%
Coastal	Environmental → Aquatic → Marine → Coastal	13.22%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.31%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.31%
Inlet	Environmental → Aquatic → Marine → Inlet	1.65%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.65%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.65%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	38.84%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	16.53%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	15.70%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	12.40%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.31%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.48%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.65%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.83%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	36.36%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	16.53%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.92%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	4.96%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.13%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.13%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	2.48%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.65%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.65%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.65%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.65%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.65%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.65%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.65%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	1.65%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.83%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.83%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.83%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.83%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.83%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.83%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.83%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000238	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100m	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001967	Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300005404	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205	Environmental	Open in IMG/M
3300005735	Seawater microbial communities from Vineyard Sound, MA, USA - control T0	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006332	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006925	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007331	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007509	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007513	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b	Environmental	Open in IMG/M
3300007514	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008624	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009370	Combined Assembly of Gp0127930, Gp0127931	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300011129	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300017702	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental	Open in IMG/M
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017737	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300020396	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020439	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300021791	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022071	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental	Open in IMG/M
3300022853	Saline water microbial communities from Ace Lake, Antarctica - #371	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300024052 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025048	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)	Environmental	Open in IMG/M
3300025071	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025079	Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)	Environmental	Open in IMG/M
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental	Open in IMG/M
3300026292	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)	Environmental	Open in IMG/M
3300026465	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 48R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026466	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 70R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027668	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)	Environmental	Open in IMG/M
3300027771	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M
3300029787	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172	Environmental	Open in IMG/M
3300031644	Marine microbial communities from water near the shore, Antarctic Ocean - #5	Environmental	Open in IMG/M
3300031647	Marine microbial communities from water near the shore, Antarctic Ocean - #179	Environmental	Open in IMG/M
3300031696	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262	Environmental	Open in IMG/M
3300031705	Marine microbial communities from water near the shore, Antarctic Ocean - #36	Environmental	Open in IMG/M
3300032274	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_101936223	3300000101	Marine	WKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
DelMOSum2011_101490371	3300000115	Marine	DMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
SI36aug09_100mDRAFT_10305591	3300000238	Marine	KDFWSKLNIDAVDICSKFYSHYHDMWKNKNFFYDDSMLWRIVYDKLVPKIQNNIDFLLQPK*
JGI24004J15324_100670021	3300001472	Marine	AVDICGKFYNHYHDMWKNKNFFYDDSMLWRTVYDKLVPKIQNNIDFLLQPK*
GOS2242_10004513	3300001967	Marine	FYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
JGI25132J35274_100040314	3300002483	Marine	MSERNFWXKIDIDPLPICSIFYEHYYNMWKNKNFFYDDSMLWIKVYNKLVPKIQNNIDFLLQPK*
Ga0066856_103604791	3300005404	Marine	HNQLHNCGMSERHFWEKIDIDPLPICSIFYKHYYDMWKNKNFFYDDSLLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0076923_1285303	3300005735	Marine	NKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0075441_101371181	3300006164	Marine	IDAVDICSKFYSHYHEMWKNKNFFYDDSMLWIEVYDKLVPKIQNNVDFLLQPK*
Ga0075443_101523463	3300006165	Marine	HDMWKNKNFFYDDAMLWVEVYDKLVPKIQNNIDFLLQPK*
Ga0068500_12666291	3300006332	Marine	QLHNCGMSERDFWLKIDIEPIAICGIFHSHYHNMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0068500_15373383	3300006332	Marine	FWLKIDIEPIAICGIFHSHYHDMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0098038_11032201	3300006735	Marine	CRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0098040_11219543	3300006751	Marine	HQLHNCGMSERDFWLKIDIEPIAICGIFHSHYHDMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0098044_13580323	3300006754	Marine	YYNMWKNKNFFYDDSELWIKVYNKLVPKILNSVDFLLQPK*
Ga0098054_12186503	3300006789	Marine	YDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0098055_11206151	3300006793	Marine	NMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0098055_12117211	3300006793	Marine	NKNFFYDDSLLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0098055_13356161	3300006793	Marine	EPIAICGIFHSHYYDMWKNKNFFYDDSLLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0066376_1001201213	3300006900	Marine	MSERNFWTKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0098060_11299181	3300006921	Marine	ICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0098060_11493401	3300006921	Marine	KDFWIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0098060_12005081	3300006921	Marine	KNKNFFYDDSQLWINVYNKLVPKILNSVDFLLQPK*
Ga0098045_11173993	3300006922	Marine	CRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0098050_11062723	3300006925	Marine	KIDIDPLPICSIFHKHHYDMWKNKNFFYDDSKLWLDVYNKLVPKIQNSVDFLLQPK*
Ga0098057_10657801	3300006926	Marine	YNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0098041_12910551	3300006928	Marine	WKNKNFFYDDSKLWLDVYNKLVPKIQNSVDFLLQPK*
Ga0098036_10873383	3300006929	Marine	EREFWSKIDIDPLPICSIFHSYYHDMWKNKNFFYDDSQLWINVYNKLVPKIQNSVDFLLQPK*
Ga0075444_102227341	3300006947	Marine	SKFYSHYHEMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0075463_100418922	3300007236	Aqueous	MSERDFWAKIDIDPLPICQIFYDHHQNMWKNKNFFYDDSKLWIDVYNKLVPKIQNNIEFLLQPN*
Ga0070747_12500273	3300007276	Aqueous	RFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0079271_10000983	3300007331	Marine	DIEPIAICGIFHSHYHDMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK*
Ga0105012_11000404	3300007509	Marine	GMSERDFWSKIDIDPMVICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0105019_12036341	3300007513	Marine	NCGMSERDFWSKIDIDPIGICGIFYDHYHNMWKNKNFFYDDSQLWIKVYNKLVPKVLNSVDFLLQPK*
Ga0105020_13378201	3300007514	Marine	HYNMWKNKNFFYDDSKLWLDVYNKLVPKIQNSIDFLLQPK*
Ga0110931_10634264	3300007963	Marine	HNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0110931_11662691	3300007963	Marine	NGMSERDFWAKLDIDAVDICGRFYNHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0105748_102137193	3300007992	Estuary Water	YSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0098052_11187314	3300008050	Marine	WKNKNFFYDDSKLWLDVYNKLVPKIQNSVDFLLQLK*
Ga0115652_10193767	3300008624	Marine	MSERDFWSKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0102854_11179911	3300009058	Estuarine	KLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0118716_10108051	3300009370	Marine	KIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0114909_10912963	3300009414	Deep Ocean	YDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0114908_11412833	3300009418	Deep Ocean	WSKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK*
Ga0115546_12239991	3300009435	Pelagic Marine	DAIEICRKFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK*
Ga0115004_107239201	3300009526	Marine	YHDMWKNKNFFYDDSMLWRTVYDKLVPKIQNNIDFLLQPK*
Ga0115011_106476901	3300009593	Marine	DAVDICGRFYNHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK*
Ga0114911_11864873	3300009603	Deep Ocean	SERDFWSKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYHKLVPKVLNSVDFLLQPK*
Ga0114933_102114202	3300009703	Deep Subsurface	MSERDFWTKIDIEPIELSRIFYDHYHNMWKNKNFFYDDSQLWINVYNKLVPKIQNNVDFLLQPK*
Ga0098056_12143951	3300010150	Marine	ERQFWEKIDINPIPICSIFYKHYYDMWKNKNFFYDDSKLWLDVYNKLVPKIQNSVDFLLQLK*
Ga0151672_1010993	3300011129	Marine	DFWIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0160423_109753032	3300012920	Surface Seawater	MSERDFWLKIDIDPIPICSIFHSHYYDMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFL
Ga0181374_10399071	3300017702	Marine	IDIDPMDICSIFYNHYYNMWKNKNFFYDDSELWIKVYNKLVPKILNSVDFLLQPK
Ga0181391_11309651	3300017713	Seawater	KLDIDAIEICRKFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181404_11646753	3300017717	Seawater	CRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0181390_10498851	3300017719	Seawater	HYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181419_11096871	3300017728	Seawater	NMWKNKNFFYDDSQLWIKVYNKLVPKIQNNVDFLLQPK
Ga0181396_10618091	3300017729	Seawater	KLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181417_11005313	3300017730	Seawater	PHHHLLHTNGMSEKNFWIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0187218_10853851	3300017737	Seawater	KDFWIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQP
Ga0187218_11258711	3300017737	Seawater	KLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQLK
Ga0181433_10236356	3300017739	Seawater	NMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181418_10523893	3300017740	Seawater	MSERDFWSKIDINPMDICSIFYDHYNNMWKNKNFFYDDSQLWINVYNKLVPKIQNNVDFL
Ga0181399_11251041	3300017742	Seawater	CRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQLK
Ga0181389_11248143	3300017746	Seawater	YHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0181389_11844692	3300017746	Seawater	WIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDKLVPKIQNNIDFLLQPK
Ga0181393_10616414	3300017748	Seawater	MWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181411_11980451	3300017755	Seawater	DIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTLYDELVPKIQNNIDFLLQPK
Ga0181411_12104893	3300017755	Seawater	DAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0181408_11463621	3300017760	Seawater	MWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0181385_12507161	3300017764	Seawater	HYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0181386_11557203	3300017773	Seawater	AIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0211687_100744025	3300020396	Marine	KNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0211532_103080783	3300020403	Marine	MSERNFWEKIDIDPLPICSIFYNHYYDMWKNKNFFYDDSHLWLKVYNKLVPKVQNSVDFLLQPK
Ga0211699_104350081	3300020410	Marine	HNCGMSERDFWTKIDIDPIDICSIFYDHYHNMWKNKNFFYDDSQLWIKVYHKLVPKVLNSVDFLLQPK
Ga0211512_102708833	3300020419	Marine	IDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0211558_104084193	3300020439	Marine	EKIDIDPLPICSIFYNHYYDMWKNKNFFYDDSHLWLKVYNKLVPKVQNSVDFLLQPK
Ga0211514_100488849	3300020459	Marine	DMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK
Ga0226832_101652871	3300021791	Hydrothermal Vent Fluids	NMWKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK
Ga0222715_105320123	3300021960	Estuarine Water	ICQIFYDHHQNMWKNKNFFYDDSKLWIDVYNKLVPKIQNNIEFLLQPN
Ga0212028_10454403	3300022071	Aqueous	QIFYDHHQNMWKNKNFFYDDSKLWIDVYNKLVPKIQNNIEFLLQPN
Ga0224906_11886393	3300022074	Seawater	DIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0196887_10050271	3300022178	Aqueous	CSKFYSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0222652_10156104	3300022853	Saline Water	IDAVDICSKFYSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0255751_1002986714	3300023116	Salt Marsh	IFYDHHQNMWKNKNFFYDDSKLWIDVYNKLVPKIQNNIEFLLQPN
(restricted) Ga0255050_100694363	3300024052	Seawater	ALLHNCGMSERDFWSKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWIKVYNKLVPKILNSVDFLLQPK
Ga0209992_101225422	3300024344	Deep Subsurface	MSERDFWSKIDINPMDICSIFYDHYNNMWKNKNFFYDDSQLWINVYNKLVPKIQNNVDFLLQPK
Ga0244775_108945073	3300024346	Estuarine	IKLDIDAVDICSKFYSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0207905_10471051	3300025048	Marine	FWTKLDIDAVDICGKFYNHYHDMWKNKNFFYDDSMLWRTVYDKLVPKIQNNIDFLLQPK
Ga0207896_10405791	3300025071	Marine	DIDAVDICGKFYNHYHDMWKNKNFFYDDSMLWRTVYDKLVPKIQNNIDFLLQPK
Ga0208668_10239941	3300025078	Marine	MSERDFWSKIDIDPMDICSIFYDHYNNMWKNKNFFYDDSQLWINVYNKLVPKILNSVDF
Ga0207890_10461223	3300025079	Marine	LDIDAVDICSKFYSHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0208298_10442103	3300025084	Marine	WKNKNFFYDDSQLWIKVYNKLVPKIQNSVDFLLQPK
Ga0208792_10601943	3300025085	Marine	QFWEKIDINPIPICSIFYKHYYDMWKNKNFFYDDSKLWLDVYNKLVPKIQNSVDFLLQPK
Ga0208157_11330041	3300025086	Marine	YHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0208157_11371922	3300025086	Marine	SERNFWSKLDIDAVDICGKFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0208669_10872581	3300025099	Marine	ICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0208666_10926071	3300025102	Marine	RFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0208013_10914563	3300025103	Marine	WIKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0208013_11012703	3300025103	Marine	KEMWKNPDFFYDDSMLWVTVYNKLVPMIKKHVDFIMQPKL
Ga0208553_10676971	3300025109	Marine	HALLHNCGMSERNFWSKIDIEPIDICSIFYDHYNNMWKNKDFFYDDSLLWIKVYHKLVPKILNSVDFLLQPK
Ga0208919_11917823	3300025128	Marine	RRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0209645_11822901	3300025151	Marine	IKLDIDAIEICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0208428_11156483	3300025653	Aqueous	HQNMWKNKNFFYDDSKLWIDVYNKLVPKIQNNIEFLLQPN
Ga0209193_11114901	3300025816	Pelagic Marine	KFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0209632_104701241	3300025886	Pelagic Marine	KDFWNKLNIDAIDICGKFYNHYHDMWKNKNFFYDDSMLWRIVYDKLVPKIQNNIDFLLQP
Ga0209631_104374741	3300025890	Pelagic Marine	FYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0208277_12059113	3300026292	Marine	HNQLHNCGMSERHFWEKIDIDPLPICSIFYKHYYDMWKNKNFFYDDSLLWIKVYNKLVPKIQNSVDFLLQPK
Ga0247588_10625063	3300026465	Seawater	DHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0247598_11631893	3300026466	Seawater	WKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0209482_101757511	3300027668	Marine	VDICGKFYQHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0209279_101087301	3300027771	Marine	HDMWKNKNFFYDDAMLWVEVYDKLVPKIQNNIDFLLQPK
Ga0209404_104363911	3300027906	Marine	DAVDICGRFYNHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
(restricted) Ga0233413_101393801	3300027996	Seawater	DMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0183757_10380871	3300029787	Marine	EICRRFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0308001_101023884	3300031644	Marine	CSKFYSHYHEMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0308012_103898672	3300031647	Marine	LDIDAVDICSKFYSHYHEMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0307995_13098302	3300031696	Marine	KDFWIKLDIDAVDICGKFYQHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQP
Ga0308003_12479271	3300031705	Marine	IDAVDICGKFYQHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK
Ga0316203_10472271	3300032274	Microbial Mat	ICRKFYDHYHNMWKNKNFFYDDSMLWRTVYDELVPKIQNNVDFLLQPK
Ga0314858_182537_389_538	3300033742	Sea-Ice Brine	DICGKFYNHYHDMWKNKNFFYDDSMLWRTVYDELVPKIQNNIDFLLQPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072755

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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