Scaffold Ga0196903_1001145

Overview

Basic Information

• Taxon OID: 3300022169
• Scaffold ID: Ga0196903_1001145
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3825
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F042350	Metagenome / Metatranscriptome	158	Y
F076122	Metagenome / Metatranscriptome	118	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196903_100114511	F090460	AGGAG	MINDKFSDKEYWQGVLETCEYFRDELGFEDATDTSLYQQATEELALV
Ga0196903_100114515	F021020	AGGAG	MSETISLNNSIVTNNYDLNIWDRRGYETEYQEEGWEISVYQYPYIGASYGSGTFMEDLTITLTPTETKRLTLGWGPDLGGDYCEDSDFWLDKDTFFQTYTDIPERVAGLLKALPEYEQIDAFR
Ga0196903_10011452	F076122	N/A	MAKHEVVNEILEYLDERRHEISNEMGMFVEEGSNDYIELAAMFDVYDHLITKLEDDYR
Ga0196903_10011457	F042350	GGA	MPGRESDYERGFIRGVSAMMNLISSDKVKRLDKSNVLQYARELVEAQKEETNVPQR