Scaffold Ga0224906_1055285

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1055285
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1260
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013311	Metagenome / Metatranscriptome	272	Y
F021299	Metagenome / Metatranscriptome	219	N
F058285	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10552851	F058285	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDSAGTSSTSDTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYINNDLLT
Ga0224906_10552852	F013311	AGGA	MAFLGDFGKFFGLGTSEEVLGDVGEVIGGTPGRFVGETVARATDNLAGDSNISPLSTADQALEQSAVPVSQRGASRPMESANIGLTGMTQQAGFGSLLPSIIGGARSVFPQIGKFVGTPTGAIVTGVGTSVGVNMLTGSDMSKMKPVLTQSRRNKARVRQLVNFMGIEGAAQFLSQASGKRITGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMARTTRRPAMRRASSTTLIKN
Ga0224906_10552853	F021299	N/A	LLKSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGVMEPPKSKLGG