Scaffold Ga0224906_1018651

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1018651
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F002412	Metagenome / Metatranscriptome	561	Y
F005467	Metagenome / Metatranscriptome	400	Y
F018084	Metagenome	237	Y
F080233	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10186512	F080233	N/A	MFYIWHTLIIATFIAVAYYMGYHHGGKEAKVKETIRKG
Ga0224906_10186515	F002182	AGGA	MIYTDQEHEWLSKPKKKRVSNQTPDGSAPVKKDMRKHDWAITTTIEVDGKRYTVPVQV
Ga0224906_10186516	F018084	N/A	MVKTILMIIAIFVVPGVIAGVVSSYRAGQKPHRDLYRKLQIFLHRKNKR
Ga0224906_10186518	F002412	N/A	MLWRTIITYAVMLTCAVAFHENTFAVFELREQLQMLYLNMWELLHQLEYVESHQRHKVYQEIEHIREQIIDTIDQLVEHDQSQHP
Ga0224906_10186519	F005467	N/A	MKYYYVMCQKGSVLHRAYVQLDPESADILHDSLEQRHDLVQVCDVRASQVDPDLLIK