Scaffold Ga0224906_1006109

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1006109
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5008
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026741	Metagenome	197	Y
F049595	Metagenome / Metatranscriptome	146	N
F081229	Metagenome	114	Y
F106098	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100610910	F106098	GAGG	VYICLSGVPVWVELKIVKSNKVSVSKSQIAWHLAHTRCKGASFFLLYDPSTSDVFLFGGDKVLEIQGSRLDDLRPAALYIGKMDGLPCVLRPAALDMWGW
Ga0224906_100610914	F081229	GAGG	MSYEQFEKECNRLLTIKVGLGIHDLADACWRDYYEDGLHPLEALNCANEDAWDYELSEVL
Ga0224906_10061095	F026741	GGGGG	MSNDKPNLTGSHFSDMLAEPFAELFKPKKYYPTITVEYSPSRDEWAEIAEAIWVGALEGGSNYWVDYIHVSGHVLKSGYDVVDSNFDVVIHHNEDEVEKVKAFDVIVDGINLLDPDRQRMALTVDELGQLDANDYDYIIQLGVFGKEMYC
Ga0224906_10061098	F049595	AGGAG	MQQVDYRFEDHGSIWLCQPLTGDARENLDQACESCEDFHIRWGNALVVEPRFVDQVAMQLVEEGWAVE