Scaffold Ga0224906_1000638

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000638
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18953
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (56.76%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001855	Metagenome / Metatranscriptome	626	N
F002282	Metagenome	575	Y
F006223	Metagenome / Metatranscriptome	378	Y
F008817	Metagenome / Metatranscriptome	327	Y
F012041	Metagenome	284	Y
F018288	Metagenome	236	N
F031928	Metagenome	181	N
F049998	Metagenome	146	N
F097160	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100063813	F018288	AGGA	MKGINMKNALDLLETFTEYEWERAKKEMAKRIPSMNINEMSMDEFKVLTKYLASPDFENIDDYRRRLH
Ga0224906_100063817	F002282	N/A	MMSEEDIIEYNKLTEQLELLKRKRVPTDDRGPLDLTKQIEVLEFRNEKLHNYNQKLIEEIRSLRSKLYVKGN
Ga0224906_100063819	F008817	AGGAG	MKYTVVKRIHFSHANDYVTVIKEADTFEDAMKFKVAAEMLESKESENVIQILINTDDAFDFTQKPLMSTDEVKQAS
Ga0224906_10006382	F031928	AGGAGG	MTYNMNFYKIGHFDREAKDFGMPHWDQADKDAVRQTAESMGWLLMYVHQNEITEDNIEEIIFRMQFADTVHGEPFMKKGGKECTVSEVRHQLKQHIGLETNGSVSTRHKYIVNIAKNLANDIDYKLTEENNK
Ga0224906_100063828	F097160	AGGAG	MINVVNGICTDCGHRHRGIAQCSFCDCVWEKISMIKKIKEFLRRLIFWTR
Ga0224906_10006383	F006223	AGGA	MTKTIKLDSYFGEKDFTLEEFKKRWAGPTNEIWAFLIDHGDKEERDFGQKLAEELFPRVAEKAFNKFYEKQNKKEEA
Ga0224906_100063831	F049998	N/A	MIKDELDIKAFYKGKEVKIIELHHLGFFYSGLTTLATKWKVKPFDVLMKDVSDETTQAALNIMIGLIYKDMCTKSGPVINLKKFKNEMLLKNKKPKVFLMESDYLKIPDNDFDNGMGFLKKIGFIGQDTYHNYIAINNSIMDYCRKLGNYLFNTWYCQESFKRNTHYFGDHNSYDHYKASQERKQISNKTLN
Ga0224906_10006384	F001855	AGGA	MQPLRKDHVDHYKDFVRDEFSLASNKVEREISQQAQDKVEEVGDKFATVINKNLPTLIKEMAKKEKALRDFQSKKSSMEHDLRVDAQVIADKITEIFNNTIKRNKWDMNRISIDIHDDNDPVDYITKKIKKACYEEAEVHARAQHKLYHALESKKKKCLNILYTGSHIQPTLVELQREMATANIQLDLPKSLLALPSK
Ga0224906_10006385	F012041	AGGA	MRKYKVTLEVDSKWVKNFNLSFDADSEQEAEAQALTEVKMNLSDYITAYADEVEE