Scaffold Ga0224906_1000055

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000055
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58121
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (23.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100005552	F074154	GGA	MNFFQLQNKLFYSNKQKQPELLDQEGEQSFVPFLFNRWLTMYSKETVCFVNETLNKYCGIFDTDKQKTYRLYFNLIPRLKFKRISYIKKIKKDQDKQDETNQLKMIAKNKNMSVRELEIYKNMLD
Ga0224906_100005553	F019756	N/A	MPQRSIDTLATQKHLIDLSTNNEGDVGLTDDFELTMIFDDILLVEYVDENDTGEIQRNGIFVPTNALTRAWRKARVILAGPKAEYTKPGDIVIFPNNLGVTVANIDVNGSAVKKGIFLNEDRLFGICKIKNDNTKSSS
Ga0224906_100005554	F015734	N/A	MIIQRAALDSLLLNNVCEIRFVRRRPRAGDGPTRRMLCTKSYKLLNSVNGRTTLNYAPPKGPTKINEAAENVLVVWDVLMQSYRTISMSSCDLIQQIPTNDFWEYFNENIYPMSPEQKYNFMNS
Ga0224906_100005555	F050011	N/A	MNVSLEKFSDCIKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFDISTLGTKTILCYKLDKFLNVGDLQLQVKFLDSSKKSKIYNENLYIMPLDEVDL
Ga0224906_100005563	F047377	N/A	LINLKPLINKNMSEKPIKTNTKDKIVKFIDAISGENYAAANKYLQSAVQDKIEARIRQAAEKPIF
Ga0224906_100005564	F037986	N/A	MNKESLPTELQDVLTEDSVESIEVALKEKVELSVEAALASQDELYAEKLETLIAQIDKDHTTKMQSIVEAVDKNNATKLGNVIKKYETELNEGASQFKEILVESISNYLEEYIDEAVPTAAIEEATRNNTAMTVLNNLRSTLAVDSSLMSESVKTAIVEGKTEMNELKTEIAELKKTNETLNENYNQAKSAAFLENRCAEFGSKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPSNPYLEGLDLMK