NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196889_1000788

Scaffold Ga0196889_1000788


Overview

Basic Information
Taxon OID3300022072 Open in IMG/M
Scaffold IDGa0196889_1000788 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8891
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F011658Metagenome / Metatranscriptome288Y
F022645Metagenome213Y
F058131Metagenome135N
F099111Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0196889_100078810F022645N/AMKDTNEIEKQLQHKADKYIEQKAKEMFEIHREIAMYLGGSLPTYIDYITDYSDYSKAYSADKSNYFTSSSPSAMQLKYQQDLAKNYKHKLVAKYTRELIMKLDIFE
Ga0196889_100078811F004523N/AMEYLSTEIKSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPIQQVWQTLQPKPLRFATYKAGYVRNVTEGLASPYQINKTKTHPSSREHYYGYKERILINSWEDRLIYLAKFIIKNYYQKTTYIMSDYVMDCLREAYVRDYNNQPSNRLPFGDEVQVIVNGHRYNLS
Ga0196889_100078814F011658N/AMKTLWQQLKPEIKQALKDQEEKYPSLIKGVKIALKENYLWSHLSIGQARDLIYFTDLSLSEMSSNDWSYGEKFFVCED
Ga0196889_10007882F099111N/AMNQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKKEIIIELNNRINNNK
Ga0196889_10007886F058131GAGMVVTLLNLKTYTINTVNNMTITFNNIGKTYKVSSDNTVKVIHHHDSIVSICGEYFKNKYTNEWLSELEVQDYYDSYKLEEENDNKYY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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