Scaffold Ga0212024_1003781

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1003781
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058446	Metagenome	135	Y
F077796	Metagenome	117	Y
F097661	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_10037813	F058446	GGGGG	MPNKLIEKIRSYLKEIDLDSLQHKYQEPSTNDDFVDYQPLPQSYINSLDDSNKEKMLQEIADRNGF
Ga0212024_10037814	F077796	N/A	MENQIPCDNCDLLENESKLIETFDNELLCSPCYIKKEFNTENEKGE
Ga0212024_10037818	F097661	N/A	MTNKIEITKENLEESCDGNYFSDDVAVKYDLQNGEINVVAYCICKNTANSMAKGLNLYNNLKEEL