 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022061 Open in IMG/M |
| Scaffold ID | Ga0212023_1001877 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2155 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000720 | Metagenome / Metatranscriptome | 923 | Y |
| F021188 | Metagenome | 220 | N |
| F046006 | Metagenome | 152 | N |
| F053545 | Metagenome | 141 | Y |
| F090883 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212023_10018771 | F053545 | N/A | TTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE |
| Ga0212023_10018772 | F090883 | GGAGG | MVTIALTMHRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQGERILRAAGKIH |
| Ga0212023_10018773 | F046006 | GGAGG | VKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTIDTMWHEIVQVKETNISLYQFIEEHGNDITGR |
| Ga0212023_10018774 | F000720 | GAGG | MTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIIMGQQSNKKQRMLSTDPYASQMKE |
| Ga0212023_10018776 | F021188 | GAGG | MKMTEEIDIIWIPEEETKHSLTVENAQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |