Scaffold Ga0196883

Basic Information
Taxon OID	3300022050 Open in IMG/M
Scaffold ID	Ga0196883_1000194 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022050 Open in IMG/M

Scaffold ID

Ga0196883_1000194 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6362
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6362

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F058166	Metagenome / Metatranscriptome	135	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196883_100019410	F018155	GGAG	MGQNSKAVSKRREELEAERLDNSIKMYYFQKGAGEHYREIQYESGRVVRTDFND
Ga0196883_100019411	F067646	AGGA	MIEWILYFIGAVFGLVAIGAVISVIAAIYIFNELD
Ga0196883_100019413	F006845	AGG	MKSYKKRMDLNSYLLQEDFEEFCRAAYERIQIACDVFGIVNDEDYFSFKERNYTKLETDYLNSIDRTIH
Ga0196883_100019414	F058166	AGGAG	MDILGGMRNSSDSQQVYLAFKTADQQFFVNGQTAIDFKYLQLDPATFKSGWGRYAGEYQYQWDAKFGEASPKPSDDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSDSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFANFDIPAFYDKDDDAVADTFKSPNDGLADKVQEMVDKNELSDDDIPF
Ga0196883_10001944	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCMELNNSMYTIQVKSRRATKEKKFVFAAENSRSMSDTYKNYSCDILAFVFFFDDQKRIMFKANTSSQNYFTFDKKIITDNMELDSLQETLNSLNSVPVLNSII
Ga0196883_10001949	F013088	AGGAG	MDEKTKKALWISEDLHKEIKIFAIKNNMNIESASQMILKLGMCSYKAEKKNGSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196883_1000194

Overview

Ecosystem & Geography

Associated Families

Sequences