NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226662_10291835

Scaffold Ga0226662_10291835


Overview

Basic Information
Taxon OID3300021966 Open in IMG/M
Scaffold IDGa0226662_10291835 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada - FW2 spades
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027437Metagenome / Metatranscriptome194Y
F096761Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0226662_102918352F027437N/AMARQISILEEKHSQGQAELVQRCSDFEEKYSQSQTELAQVSAALNDANTLNSTLRAQLDSEKVTYETVPCITVFLLPA
Ga0226662_102918353F096761N/AMASQLRLQGASVPEGASSLARWNPVLLQHRVSNLEATNAG

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